Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14660 263 / 4e-91 NRPE7 RNA polymerase Rpb7-like, N-terminal domain (.1) AT3G22900 208 / 3e-69 NRPD7 RNA polymerase Rpb7-like, N-terminal domain (.1) AT4G14520 96 / 9e-25 DNA-directed RNA polymerase II-related (.1.2.3) AT5G59180 67 / 4e-14 NRPB7 DNA-directed RNA polymerase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023619 [exp] 355 / 3e-127 AT4G14660 266 / 2e-92 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10023620 [exp] 255 / 8e-88 AT4G14660 205 / 3e-68 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10024251 [exp] 138 / 1e-42 AT4G14660 117 / 1e-34 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10004986 [exp] 68 / 2e-14 AT5G59180 325 / 2e-115 DNA-directed RNA polymerase II (.1) Lus10001559 [exp] 68 / 3e-14 AT5G59180 331 / 5e-118 DNA-directed RNA polymerase II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161700 [exp] 286 / 4e-100 AT4G14660 293 / 5e-103 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.010G077300 [exp] 277 / 2e-96 AT4G14660 261 / 3e-90 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.010G077200 [exp] 160 / 3e-50 AT4G14660 171 / 1e-54 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.001G377200 [exp] 69 / 5e-15 AT5G59180 340 / 1e-121 DNA-directed RNA polymerase II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF03876 [flax] [poplar] SHS2_Rpb7-N SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
Representative CDS sequence Show only first row Show all	>Lus10024250 pacid=23175764 polypeptide=Lus10024250 locus=Lus10024250.g ID=Lus10024250.BGIv1.0 annot-version=v1.0 ATGTATTTGAAAGTGAAGCTGCCTTGGAATGTGATAATTCCAGCTGATTCCCTGGACGCCAAAGGACTCCTACTTCAAAGGGCAATCATGATAAAGCTGC TGGAAGAATTTTCGAGAAGGCGCTCCGACAAAGATCTTGGATACCGCATCGCTCTCACGACTGTGGATCACATCGGGGAGGGACAGGTGAGGCAGCACAC AGGGGAAGTACTGTTTCCTGTGGTATTCAGTGCCATCACATTCAAGATCTTCAGGGGAGAAGTTCTGGAGGGAGCGGTGCACAAGGTCTTCAAGCACGGG GTGTTCTTGCGGTGTGGACCAATCGAGAATGCCTACCTCTCGTGCACGAAGATGCCAGGATACCGCTACATCCCTGGAGAGAACCCGGAGTTCATCAACG AAAAGATGCCCAAAATTGGGAACGATGTGGTGGTTCGGTTCATGGTGATCGGGACCAAGTGGCTGGAAGCTGATAGGGAGTTCCAGGCCCTGGTTGGCTT GGAGGGCGATTTTCTAGGTCCGGTCTCCGTTAATTCTTCTATGTAA
AA sequence Show only first row Show all	>Lus10024250 pacid=23175764 polypeptide=Lus10024250 locus=Lus10024250.g ID=Lus10024250.BGIv1.0 annot-version=v1.0 MYLKVKLPWNVIIPADSLDAKGLLLQRAIMIKLLEEFSRRRSDKDLGYRIALTTVDHIGEGQVRQHTGEVLFPVVFSAITFKIFRGEVLEGAVHKVFKHG VFLRCGPIENAYLSCTKMPGYRYIPGENPEFINEKMPKIGNDVVVRFMVIGTKWLEADREFQALVGLEGDFLGPVSVNSSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10024250 [exp]	0	1
AT4G13590			Uncharacterized protein family...		Lus10023685 [exp]	9.8	0.8337
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10019497 [exp]	12.0	0.8151
AT4G15620			Uncharacterised protein family...		Lus10041528 [exp]	12.4	0.8392
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10042054 [exp]	15.8	0.7188
AT4G18593			dual specificity protein phosp...		Lus10001888 [exp]	16.4	0.7748
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10007648 [exp]	18.3	0.8164
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014690 [exp]	18.6	0.8341
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	19.3	0.8348
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	33.0	0.8307
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10039077 [exp]	34.5	0.7222

Compare expression of checked genes

Lus10024250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.