Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008569 [exp] 177 / 3e-56 AT1G48120 50 / 6e-07 hydrolases;protein serine/threonine phosphatases (.1) Lus10039552 [exp] 171 / 4e-53 ND 60 / 9e-10 Lus10004097 [exp] 160 / 1e-48 AT1G48120 61 / 4e-10 hydrolases;protein serine/threonine phosphatases (.1) Lus10017783 [exp] 147 / 7e-45 ND / Lus10034854 [exp] 145 / 9e-45 AT1G48120 69 / 3e-14 hydrolases;protein serine/threonine phosphatases (.1) Lus10005532 [exp] 147 / 1e-43 ND 52 / 3e-07 Lus10003038 [exp] 140 / 1e-40 ND 61 / 7e-10 Lus10003770 [exp] 134 / 2e-40 ND / Lus10002004 [exp] 132 / 2e-39 AT1G48120 58 / 2e-10 hydrolases;protein serine/threonine phosphatases (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024253 pacid=23175735 polypeptide=Lus10024253 locus=Lus10024253.g ID=Lus10024253.BGIv1.0 annot-version=v1.0 ATGAGGGCACACGTTTGTGGATGTCATTTACATGTATGTCTTGTCTTTCAGTGGGTCTCCTACTACGGCTGTGAGGATTCGCCTTTCTCGGTTGAGGCAC ACATGGTCATTGTCCCACTGCTTTCTCCCCACAACATCTCATGGCATCGATCAGACTGCATCTTCAAACAGTTTCAAATGGCCCATCCCATCCCCACCTT GGACATGTTGAAGGGTGAGGTCATGTTTGTGTTTGGACTAACACAGAGGAACGAGATGGCTTGGGAGGTGAGCATGGAGTTGTACCTTAACCAGTGGGAA ATCATATTGGACCACGTGGCGGTGAGTGCATTTGTCAAAGATCCAGAGAGGTGGAACTTCCACAAAGAGTACATGGTGTGGTACCGTCAGTACACTTGCA GGTGGACTTCGAAACGGGGGATAATACAACAGTCGATTATTGACGAGTTAGAGAACCTATCTGTTAGGGTAGGTTCACAGGAGCAGCTCGGTAGAGAGGA CACCGAGGCGGTTCGGAAATGCCTACATTCCATGATGCACGCGACAATACGCACTTGA
AA sequence Show only first row Show all	>Lus10024253 pacid=23175735 polypeptide=Lus10024253 locus=Lus10024253.g ID=Lus10024253.BGIv1.0 annot-version=v1.0 MRAHVCGCHLHVCLVFQWVSYYGCEDSPFSVEAHMVIVPLLSPHNISWHRSDCIFKQFQMAHPIPTLDMLKGEVMFVFGLTQRNEMAWEVSMELYLNQWE IILDHVAVSAFVKDPERWNFHKEYMVWYRQYTCRWTSKRGIIQQSIIDELENLSVRVGSQEQLGREDTEAVRKCLHSMMHATIRT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48120			hydrolases;protein serine/thre...		Lus10024253 [exp]	0	1

Compare expression of checked genes

Lus10024253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.