Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18870 449 / 1e-154 ATICS2, ICS2 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2) AT1G74710 445 / 5e-152 ATICS1, SID2, EDS16, ICS1 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2) AT2G29690 62 / 5e-10 ATHANSYNAB, ASA2 anthranilate synthase 2 (.1) AT5G05730 54 / 1e-07 JDL1, WEI2, TRP5, AMT1, ASA1 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) AT3G55870 46 / 4e-05 ADC synthase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023622 [exp] 689 / 0 AT1G74710 623 / 0.0 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2) Lus10029849 [exp] 77 / 2e-14 AT2G47430 489 / 2e-153 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10041403 [exp] 55 / 1e-07 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10036525 [exp] 54 / 3e-07 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10014830 [exp] 51 / 2e-06 AT2G29690 875 / 0.0 anthranilate synthase 2 (.1) Lus10016945 [exp] 49 / 9e-06 AT2G29690 872 / 0.0 anthranilate synthase 2 (.1) Lus10009888 [exp] 47 / 2e-05 AT5G05730 755 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10014842 [exp] 47 / 3e-05 AT5G05730 864 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10020692 [exp] 0 / 1 ND 69 / 1e-14
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G070000 [exp] 519 / 0 AT1G18870 628 / 0.0 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2) Potri.010G221500 [exp] 55 / 1e-07 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Potri.010G190600 [exp] 50 / 4e-06 AT5G05730 835 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Potri.009G044300 [exp] 46 / 4e-05 AT2G29690 808 / 0.0 anthranilate synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00425 [flax] [poplar] Chorismate_bind chorismate binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10024255 pacid=23175733 polypeptide=Lus10024255 locus=Lus10024255.g ID=Lus10024255.BGIv1.0 annot-version=v1.0 ATGATCTACCAAAGGTCCCAATCAAAGAAAATTGAAGCAGTCGACTGGCTTCATGCCCAAACTCACCTTCTTCCTCGCTGTTTCTTCTCTGGAAGAAGCC ATGGACACAGCAGCACTGACCTTCTCATTCACTCCGCCAATGGAAATGGAAACGGCCGTCTATTAAACCAAAACCTCGCTAGTGTAGCTGGCGTTGGCTC TGCAGTCCTCTTCAGACATTCGCGCCCTTTCTCCTATAACGACTGGAAATGCATCAAGAGGTTCCTCCCAGCCACATGTCTCCTGATTCGAGCTTATGGA GCCATCCGATTCGCAGCTTCCAACGTGTGGCCCGAATGGGAGGCCTTTGGCTCCTTTTACTTCATCATCCCTCAGGTTGAGTGGACGAGCTTGAGGGACG CTCGATGCTTGCTGCAACAATCGCTTGGGATAATGACCTCTCCTGGACAATTCCTAATTCTGCAGATATCATCTTCCATTGTTAAGTTGAGGAAAGAAGT TGCCAGGACTTACATTTTGAGCAACGATCACTCTCCTAGTAAGCCAAAGTGGGATAATGCTGTTAATAGAGCTCTTAATATGATCAGCAAAACGACTTCA CCACTCTTAACGGTTGTTTTTGCTTGGAGCAGCAAGGTTGTTACTATGTCTGATATTGATCCTATAACCTGGTTGGCTTGTCTTCAGGTGGAAGGTCAAG ATGCTTTCCAGTTCAGTCTTCAGCCACCTGATACATCAGCTTTTATAGGCAACACGCCAGAGCAACTGTTCCATAGAAAAGGGCTGCGGATCGAAAGTGA AGCATTGGCAGGAACTCGAGCTAGAGGTGGATCGAATGCTCTAGATGTACAGATAGAACTAGATTTGCTTTCAAGTCCGAAGGACCATCTCGAGTTCACA ATAGTGCGAGATAGCATAAGGAGAAAACTAGAGGCAATTTGCAGCGGAGTTGTAATCAAACCAAGTAAAGCAATTCGAAAGTTAGCAAGAGTCCAACATT TGTATGCCAAATTGGCAGGCAAGTTAGGAAGTAAAGATGATGAGTTTGACATCTTGTCTGCACTCCACCTACCTCCAGCAGTCTGCGGATTCCCAGCAGA GGACGCTAGGTCTCTGATCACTGAAACTGGACCAGTAGGATGGTTTGGAGGTGGAGAAAGTGAGTTTGCTGTTGGCATAAGATCTGCCTTGGTTAAAAAG GGCCTGGACGTGCTGATCTATGCCGGTACGGGTATTGTGGAAGGAAGCGACCCATCTCTCGAATGGGATGAATTGGAACTGAAGACATCACAAGTATTTG GGACTAATGCAGGTGAGCTGATGAGGGAAGTGAATGCTCGGAAGATGAGCATGTTAGGAGCCGAAACTATCGAAGTATGTGGAAACGAGAAGGAGGCATT TGATAGAGTCTCGACTGCGTTGAGAGGGTCTCGAAGCAAGGATAGAAGCAATATGCCCTAA
AA sequence Show only first row Show all	>Lus10024255 pacid=23175733 polypeptide=Lus10024255 locus=Lus10024255.g ID=Lus10024255.BGIv1.0 annot-version=v1.0 MIYQRSQSKKIEAVDWLHAQTHLLPRCFFSGRSHGHSSTDLLIHSANGNGNGRLLNQNLASVAGVGSAVLFRHSRPFSYNDWKCIKRFLPATCLLIRAYG AIRFAASNVWPEWEAFGSFYFIIPQVEWTSLRDARCLLQQSLGIMTSPGQFLILQISSSIVKLRKEVARTYILSNDHSPSKPKWDNAVNRALNMISKTTS PLLTVVFAWSSKVVTMSDIDPITWLACLQVEGQDAFQFSLQPPDTSAFIGNTPEQLFHRKGLRIESEALAGTRARGGSNALDVQIELDLLSSPKDHLEFT IVRDSIRRKLEAICSGVVIKPSKAIRKLARVQHLYAKLAGKLGSKDDEFDILSALHLPPAVCGFPAEDARSLITETGPVGWFGGGESEFAVGIRSALVKK GLDVLIYAGTGIVEGSDPSLEWDELELKTSQVFGTNAGELMREVNARKMSMLGAETIEVCGNEKEAFDRVSTALRGSRSKDRSNMP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18870		ATICS2, ICS2	ARABIDOPSIS ISOCHORISMATE SYNT...		Lus10024255 [exp]	0	1
					Lus10040066 [exp]	15.7	0.7532
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10006159 [exp]	18.0	0.6449
AT3G22250			UDP-Glycosyltransferase superf...		Lus10031068 [exp]	21.9	0.6829
AT4G09760			Protein kinase superfamily pro...		Lus10028696 [exp]	22.7	0.7136
					Lus10039759 [exp]	23.8	0.7417
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	30.0	0.7137
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10035865 [exp]	32.4	0.7146
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10021462 [exp]	40.2	0.7024
AT1G24110			Peroxidase superfamily protein...		Lus10029201 [exp]	43.1	0.6855
AT4G28050		TET7	tetraspanin7 (.1)		Lus10038964 [exp]	45.0	0.6991

Compare expression of checked genes

Lus10024255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.