Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24100 59 / 3e-10 ASG1 ALTERED SEED GERMINATION 1, unknown protein AT4G30780 53 / 3e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029847 [exp] 108 / 2e-27 AT2G24100 160 / 6e-42 ALTERED SEED GERMINATION 1, unknown protein Lus10020694 [exp] 97 / 2e-23 AT2G24100 145 / 5e-38 ALTERED SEED GERMINATION 1, unknown protein Lus10010920 [exp] 96 / 3e-23 AT2G24100 184 / 8e-54 ALTERED SEED GERMINATION 1, unknown protein Lus10029846 [exp] 90 / 5e-21 AT2G24100 137 / 2e-35 ALTERED SEED GERMINATION 1, unknown protein Lus10024097 [exp] 62 / 3e-11 AT2G24100 335 / 2e-110 ALTERED SEED GERMINATION 1, unknown protein Lus10041622 [exp] 59 / 3e-10 AT2G24100 351 / 1e-116 ALTERED SEED GERMINATION 1, unknown protein Lus10035819 [exp] 59 / 3e-10 AT4G30780 514 / 3e-177 unknown protein Lus10036602 [exp] 57 / 8e-10 AT4G30780 511 / 5e-176 unknown protein Lus10036316 [exp] 0 / 1 ND 42 / 4e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009000 [exp] 76 / 3e-16 AT2G24100 202 / 6e-59 ALTERED SEED GERMINATION 1, unknown protein Potri.005G014600 [exp] 64 / 6e-12 AT2G24100 167 / 5e-46 ALTERED SEED GERMINATION 1, unknown protein Potri.001G041800 [exp] 63 / 1e-11 AT2G24100 363 / 5e-121 ALTERED SEED GERMINATION 1, unknown protein Potri.003G185050 [exp] 58 / 4e-10 AT2G24100 392 / 2e-132 ALTERED SEED GERMINATION 1, unknown protein Potri.006G180500 [exp] 57 / 1e-09 AT4G30780 503 / 2e-173 unknown protein Potri.018G102800 [exp] 57 / 2e-09 AT4G30780 501 / 1e-172 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024256 pacid=23175776 polypeptide=Lus10024256 locus=Lus10024256.g ID=Lus10024256.BGIv1.0 annot-version=v1.0 ATGGGAAATGGTGATGGTGCGTTCAAGAAGAAGATCAAAATCCGATGGTCCAATATCATAGCCATCGATGCTTCTGATCCTGGTGTTCTCAACGTTGAAG CCAATATTGATCCTCAGCCGAGAAAGAACACATTGTGGAAGGTAGCATCTGATTTCACTAGAGGTGAAGCTTTGACATGCAGGAGGCCTCAAATCATCTA TCGGCCAGGGCACCTTGAAAAGCCATACCAACAGCTATTGAAATTTGGTAGAGAAGAAGTTGAATATGACTCGAGCAGGATGATGAACTTTGATTATACC TCTCAAGCAGCAAAGAACCACTACAATGATGATCTCCTGGGAAGTATTGACCTGCAGGAAGGACTCGATGAGGTGTATGGTATTGGAATGAGTAGTAGTA CTCAACCATTAAGGAATTTTGATGATGGAGGAGATTTGAGCAAGGTGGTTTATGGATTTGTATTAGGAGGTGATCAATTGTATAATAACCAACAAAATCA GGAGCAACAAGGTTTTTTCCAGGATACTACTACTGGTATGGTTGCAAATGGAAATAGTGGAGAGATGTATTAG
AA sequence Show only first row Show all	>Lus10024256 pacid=23175776 polypeptide=Lus10024256 locus=Lus10024256.g ID=Lus10024256.BGIv1.0 annot-version=v1.0 MGNGDGAFKKKIKIRWSNIIAIDASDPGVLNVEANIDPQPRKNTLWKVASDFTRGEALTCRRPQIIYRPGHLEKPYQQLLKFGREEVEYDSSRMMNFDYT SQAAKNHYNDDLLGSIDLQEGLDEVYGIGMSSSTQPLRNFDDGGDLSKVVYGFVLGGDQLYNNQQNQEQQGFFQDTTTGMVANGNSGEMY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024256 [exp]	0	1
AT3G05950			RmlC-like cupins superfamily p...		Lus10041900 [exp]	3.5	0.7482
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005360 [exp]	4.2	0.7197
AT1G48120			hydrolases;protein serine/thre...		Lus10008255 [exp]	5.3	0.7884
					Lus10025367 [exp]	7.9	0.6529
AT5G15110			Pectate lyase family protein (...		Lus10033018 [exp]	13.6	0.6798
AT2G15220			Plant basic secretory protein ...		Lus10019802 [exp]	18.5	0.6595
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10010054 [exp]	19.0	0.6506
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10009726 [exp]	19.4	0.6537
AT2G25344		LCR14	low-molecular-weight cysteine-...		Lus10014355 [exp]	19.6	0.6400
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10001863 [exp]	23.6	0.6634

Compare expression of checked genes

Lus10024256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.