Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029847 [exp] 184 / 9e-55 AT2G24100 160 / 6e-42 ALTERED SEED GERMINATION 1, unknown protein Lus10020694 [exp] 142 / 1e-40 AT2G24100 145 / 5e-38 ALTERED SEED GERMINATION 1, unknown protein Lus10011275 [exp] 82 / 1e-21 ND / Lus10029846 [exp] 77 / 3e-17 AT2G24100 137 / 2e-35 ALTERED SEED GERMINATION 1, unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024257 pacid=23175727 polypeptide=Lus10024257 locus=Lus10024257.g ID=Lus10024257.BGIv1.0 annot-version=v1.0 ATGAATCACTTACCTCATTACAATCCTGCTCAGGGTTCCAATCATCAGAATGTTGATTCCATCGCATTGCCTCCTCCTCAGAATGAGCTCTATCACCAAG TTCTAATAGAGGAGCGTTTTTGGGAAGTCCCTCTTAGGTTGAAGCTCGATAAATCCCCGGACTTCCTAAGCTTGGTGGAGAGGAACCTGAATCATGATCA TCAACATATTACTGAATTGAAAAGGAAGTCGAGGCTCGACAAATATGGTTCCCTGTCGGTGGATGCCTCTAATCAGAAGTTGAAAGCTTCAACCATTCTG GCCTCAGATGAGAAGTTGAAAGCTTTAAGCATTCTAGACAATGTGATAGTTCCTATCGAGGCTACTTATCTAATAGCACAGTGTTACTGCAATGAGAAGA AGCTGGCGTGA
AA sequence Show only first row Show all	>Lus10024257 pacid=23175727 polypeptide=Lus10024257 locus=Lus10024257.g ID=Lus10024257.BGIv1.0 annot-version=v1.0 MNHLPHYNPAQGSNHQNVDSIALPPPQNELYHQVLIEERFWEVPLRLKLDKSPDFLSLVERNLNHDHQHITELKRKSRLDKYGSLSVDASNQKLKASTIL ASDEKLKALSILDNVIVPIEATYLIAQCYCNEKKLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024257 [exp]	0	1
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10024770 [exp]	11.4	0.7903
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	22.7	0.7750
AT4G12840			Protein of unknown function (D...		Lus10008748 [exp]	37.7	0.7577
					Lus10003450 [exp]	77.2	0.7434
AT1G13620		RGF2	root meristem growth factor 2,...		Lus10019202 [exp]	94.9	0.7301
AT5G14920			Gibberellin-regulated family p...		Lus10014519 [exp]	104.5	0.7225
					Lus10022643 [exp]	112.0	0.7285
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10028914 [exp]	114.3	0.7283
AT1G73210			Protein of unknown function (D...		Lus10018267 [exp]	117.7	0.6957
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10019058 [exp]	275.6	0.6768

Compare expression of checked genes

Lus10024257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.