Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04890 61 / 2e-11 RTM2 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) AT2G27140 58 / 8e-11 HSP20-like chaperones superfamily protein (.1) AT5G20970 58 / 1e-10 HSP20-like chaperones superfamily protein (.1) AT3G10680 45 / 5e-06 HSP20-like chaperones superfamily protein (.1) AT1G53540 44 / 8e-06 HSP20-like chaperones superfamily protein (.1) AT1G54400 43 / 1e-05 HSP20-like chaperones superfamily protein (.1) AT4G21870 40 / 0.0002 HSP20-like chaperones superfamily protein (.1) AT5G37670 39 / 0.0002 HSP15.7CI HSP20-like chaperones superfamily protein (.1) AT4G27670 39 / 0.0004 HSP21 heat shock protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023624 [exp] 271 / 1e-93 AT5G04890 47 / 4e-06 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10008426 [exp] 59 / 1e-10 AT2G27140 111 / 7e-29 HSP20-like chaperones superfamily protein (.1) Lus10028577 [exp] 48 / 6e-07 AT1G76770 152 / 3e-44 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 46 / 2e-06 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10018882 [exp] 46 / 3e-06 AT1G76770 153 / 2e-44 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 45 / 4e-06 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10007666 [exp] 44 / 8e-06 AT4G21870 122 / 2e-36 HSP20-like chaperones superfamily protein (.1) Lus10003356 [exp] 44 / 1e-05 AT2G27140 103 / 3e-26 HSP20-like chaperones superfamily protein (.1) Lus10028874 [exp] 44 / 1e-05 AT5G04890 103 / 4e-24 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G070100 [exp] 134 / 2e-40 AT2G27140 74 / 3e-16 HSP20-like chaperones superfamily protein (.1) Potri.015G064800 [exp] 128 / 6e-38 AT1G07400 64 / 7e-13 HSP20-like chaperones superfamily protein (.1) Potri.004G191000 [exp] 62 / 7e-13 AT2G27140 81 / 2e-19 HSP20-like chaperones superfamily protein (.1) Potri.008G013800 [exp] 64 / 1e-12 AT5G04890 135 / 3e-36 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Potri.008G014000 [exp] 56 / 1e-09 AT3G10680 84 / 1e-17 HSP20-like chaperones superfamily protein (.1) Potri.010G245500 [exp] 54 / 5e-09 AT5G04890 113 / 2e-28 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Potri.009G153100 [exp] 50 / 7e-08 AT2G27140 110 / 5e-29 HSP20-like chaperones superfamily protein (.1) Potri.009G153000 [exp] 50 / 1e-07 AT2G27140 79 / 1e-17 HSP20-like chaperones superfamily protein (.1) Potri.004G191200 [exp] 50 / 1e-07 AT2G27140 106 / 3e-27 HSP20-like chaperones superfamily protein (.1) Potri.004G191101 [exp] 50 / 1e-07 AT2G27140 109 / 2e-28 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10024258 pacid=23175784 polypeptide=Lus10024258 locus=Lus10024258.g ID=Lus10024258.BGIv1.0 annot-version=v1.0 ATGCCACAGACACAGAGAGCTACATCCCGTGACCATCTAGTTGTGGAGTTGGTTCCTTCGTCGGCTTGGGACGATGACAACCATTCCCATTTTCTCCTCA TTGATCTCCCTGGGTTTAGGAAGGAGGATGTTAGTCTGCAAGTGGACGGTGGAGGAAATCAGATAATAGTGACCGGAGAGAGGCTACTGAACCACAACAA ATACATCTACTTCCATCAAACATATCGACTACCGTACGGGATCTCGGAAACCGACAACATTACCGGAAAATTTGACGGTGAGATCCTTTATGTCACAGTT CCAAAGCATGAGGTATCAGAAGGGACAATAGCTGAAAGATTACCAGACACAATAGCATCATCGACTAGTACTAGCAATCCTGAAGAGGGGAGGATTCGCG GAATAAGCAGCAGTCAAGTTTCTGAGTTTGGGAAAGCTGAATTAGAGAAATGGGAATATTGCGGATAA
AA sequence Show only first row Show all	>Lus10024258 pacid=23175784 polypeptide=Lus10024258 locus=Lus10024258.g ID=Lus10024258.BGIv1.0 annot-version=v1.0 MPQTQRATSRDHLVVELVPSSAWDDDNHSHFLLIDLPGFRKEDVSLQVDGGGNQIIVTGERLLNHNKYIYFHQTYRLPYGISETDNITGKFDGEILYVTV PKHEVSEGTIAERLPDTIASSTSTSNPEEGRIRGISSSQVSEFGKAELEKWEYCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10024258 [exp]	0	1
AT1G79910			Regulator of Vps4 activity in ...		Lus10025779 [exp]	8.3	0.8962
AT4G22370			unknown protein		Lus10003793 [exp]	12.2	0.8760
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10020264 [exp]	17.5	0.8746
AT1G47271			Cystathionine beta-synthase (C...		Lus10001964 [exp]	18.0	0.8686
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10000180 [exp]	20.0	0.8737
AT1G13920			Remorin family protein (.1)		Lus10037111 [exp]	21.7	0.8681
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021507 [exp]	24.7	0.8585
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10022608 [exp]	25.1	0.8555
AT4G37445			unknown protein		Lus10001408 [exp]	27.3	0.8681
AT5G21910			unknown protein		Lus10038069 [exp]	29.5	0.8673

Compare expression of checked genes

Lus10024258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.