Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24503 687 / 0 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT1G23800 512 / 2e-178 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 506 / 5e-176 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G48170 335 / 8e-110 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G74920 331 / 2e-108 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 275 / 3e-86 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G66658 180 / 3e-50 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G14170 172 / 1e-47 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT2G24270 154 / 3e-41 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G54100 154 / 5e-41 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023625 [exp] 923 / 0 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023626 [exp] 675 / 0 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 513 / 7e-179 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 508 / 5e-177 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10019387 [exp] 486 / 2e-166 AT3G24503 548 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10043245 [exp] 471 / 6e-164 AT3G24503 487 / 2e-170 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10034115 [exp] 320 / 5e-103 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10042149 [exp] 309 / 1e-99 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10043470 [exp] 295 / 2e-94 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G075000 [exp] 728 / 0 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.002G189900 [exp] 524 / 0 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.015G074100 [exp] 512 / 2e-178 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.012G078700 [exp] 500 / 9e-174 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G070600 [exp] 335 / 1e-109 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 330 / 6e-108 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 279 / 8e-88 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.001G283100 [exp] 180 / 2e-50 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G242333 [exp] 180 / 2e-50 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.008G106000 [exp] 179 / 1e-49 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10024259 pacid=23175731 polypeptide=Lus10024259 locus=Lus10024259.g ID=Lus10024259.BGIv1.0 annot-version=v1.0 ATGGAAGGTGAAAGCAACGGAAAAGCCACCTCTCCTTTCTCCCATCTGATTCCCTCTGTTAAGTTCACCAAGCTCTTCATCAATGGCCAGTTCGTTGATT CCGTTTCAGGGAAAACATTCGAGACAATATCGCCGAGAACAGGGGAAGTCATTGCCCAAGTATCCCAAGGAGACAAGTCCGACGTGGACCTCGCCGTCGT GGCAGCCCGCGATGCTTTCGATAACGGCCCATGGCCTCGAATGTCCGGCTATGCGAGAGGAAGAATAATGATGAAATTCGCGGACTTGATGGAACAAAAC ACCGATGAAATCGCGGGGTTGGAGGCCGTGGACGGCGGGAAGCTGTTCACGTTCGGTAAGATGGCTGAGGTTCCGTTCGGCACGAACCAGATACGGTACT ACGCCGGAGCGGCGGACAAGATTCACGGGGACGTGTTGAAAATGTCGAGGGAGCTTCACGGGTATACTTTGCTGGAACCGTTTGGAGTGGTGGGACTCAT TATTCCATGGAATTTCCCCTGCAGCCTCTTCTTCTCGAAAGTAGCTCCTGCGCTCGCCGCCGGCTGCACCATGGTCGTCAAGCCCGCCGAGCAGACTCCC CTCTCCGCTCTCTTCTTTGCTCATCTTGCCAAGGAGGCCGGAATCCCTGACGGAGTGCTGAACGTGGTGAATGGGATGGGGGTGACGGCAGGAGCGGCCA TTGCATCGCACATGGACATCGACAAGGTAAGTTTCACCGGATCGACTGCGGTTGGAAGGAAGATAATGCAGGCAGCAGCATTAAGCAACTTGAAGCCCGT CTCTCTGGAGCTAGGCGGCAAATCCCCTGTTTTGGTCTTTGACGACGCTGATGTGGACAAAGCTGTTGACCTTGCTCTCCAAGCCATTTTCTACAACAAA GGAGAAGTTTGTGCGGCGGGTTCACGTGTATATGTACAGGAAGGGATCTACGAAGAGTTTGTGAACAAGTTAGCTGACAAGTCCAAGGAATGGACATCCG GTGACCCTCTAGATCCCACCTCCCGCGTTGGTCCTCAAGTGAGTAAGACACAGTACGAGAAAGTGTTGTCTTATATTGAACACGGCAAGAGAGAAGGAGC AACCTTGCTAACCGGCGGCAAACCTGCTGCCGACACTGGCTACTACATCCAGCCCACTGTTTTCACCGACGTCCAGGAACACATGCTGATAGCCACAGAC GAAATCTTCGGACCAGTTATGGCATTGATGAAGTTCAAGCCAATAGAAGAGGGTATTAAGTTAGCCAACAACACAAAGTATGGCCTAGCTTCAGGAATTG TGACCAAAAGCTTGGACATAGCCAACACAGTGTCTAGATCAATACGAGCCGGATCAGTGTGGATCAATTGTTACCACGGATTCGACCTGGATTGCCCCTT TGGTGGATACAAGATGAGTGGCTTCGGACGAGATTTCGGAATGGAAGCTCTTCACAAGTATCTCCAGGTCAAGTCCGTCGTCACTCCCATCTACAACTCT CCCTGGATGTAA
AA sequence Show only first row Show all	>Lus10024259 pacid=23175731 polypeptide=Lus10024259 locus=Lus10024259.g ID=Lus10024259.BGIv1.0 annot-version=v1.0 MEGESNGKATSPFSHLIPSVKFTKLFINGQFVDSVSGKTFETISPRTGEVIAQVSQGDKSDVDLAVVAARDAFDNGPWPRMSGYARGRIMMKFADLMEQN TDEIAGLEAVDGGKLFTFGKMAEVPFGTNQIRYYAGAADKIHGDVLKMSRELHGYTLLEPFGVVGLIIPWNFPCSLFFSKVAPALAAGCTMVVKPAEQTP LSALFFAHLAKEAGIPDGVLNVVNGMGVTAGAAIASHMDIDKVSFTGSTAVGRKIMQAAALSNLKPVSLELGGKSPVLVFDDADVDKAVDLALQAIFYNK GEVCAAGSRVYVQEGIYEEFVNKLADKSKEWTSGDPLDPTSRVGPQVSKTQYEKVLSYIEHGKREGATLLTGGKPAADTGYYIQPTVFTDVQEHMLIATD EIFGPVMALMKFKPIEEGIKLANNTKYGLASGIVTKSLDIANTVSRSIRAGSVWINCYHGFDLDCPFGGYKMSGFGRDFGMEALHKYLQVKSVVTPIYNS PWM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10024259 [exp]	0	1
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10023620 [exp]	18.2	0.6739
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005412 [exp]	37.8	0.6645
AT2G39040			Peroxidase superfamily protein...		Lus10021956 [exp]	47.8	0.6540
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10008259 [exp]	53.8	0.6509
					Lus10014855 [exp]	57.7	0.6380
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10033119 [exp]	148.2	0.5652
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10037062 [exp]	181.9	0.5511
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10017278 [exp]	187.7	0.5332
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004347 [exp]	229.8	0.5359

Compare expression of checked genes

Lus10024259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.