Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24503 208 / 2e-65 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 147 / 8e-42 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G23800 142 / 3e-40 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G74920 105 / 1e-26 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 103 / 7e-26 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G79440 96 / 3e-23 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G66658 63 / 1e-11 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G24270 57 / 1e-09 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G54100 55 / 4e-09 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT2G14170 51 / 1e-07 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023626 [exp] 252 / 6e-82 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10019387 [exp] 224 / 6e-70 AT3G24503 548 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023625 [exp] 207 / 5e-65 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 204 / 1e-63 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10030143 [exp] 152 / 4e-45 AT1G79580 279 / 1e-91 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10043245 [exp] 148 / 5e-43 AT3G24503 487 / 2e-170 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 145 / 4e-41 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 141 / 1e-39 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10004238 [exp] 106 / 7e-28 AT1G74920 533 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G075000 [exp] 228 / 4e-73 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.012G078700 [exp] 148 / 3e-42 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G074100 [exp] 148 / 4e-42 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.002G189900 [exp] 139 / 7e-39 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.012G075600 [exp] 107 / 3e-27 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 106 / 5e-27 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 96 / 2e-23 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.008G106000 [exp] 73 / 4e-15 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.018G020600 [exp] 57 / 7e-10 AT2G24270 889 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.003G067700 [exp] 56 / 2e-09 AT1G54100 850 / 0.0 aldehyde dehydrogenase 7B4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10024260 pacid=23175728 polypeptide=Lus10024260 locus=Lus10024260.g ID=Lus10024260.BGIv1.0 annot-version=v1.0 ATGCAGGCAACAGCAACCAGTAATCTGAAACAAGTTTCACTTGAATTGGGTGGAAAATCTCCTCTCTTAATCTTCAACGATGCCGACATCGATGCAGCTG CTGATCTCGCTCTCCTAGGTATCCTATTCAACAAGGGTGAAGTTTGTGTGGCAAGTTCGAGAGTCTTTGTACAAGAAGGGATATATGGCGAGTTTGTGAC CAAATTGGTTGAAAAAGTCAAAGATTGGGTGGTTGGGGATCCTTCCAACCTCAATTCTCGTCTCGGTCCACAGGTTGATAAGAAGCAATATGAGAAAATA ATGTCCTACATTGAGCACGGGAAAAGACAAGGAGCCACCTTGGAGGATATGATGGTAGCCCAGGACGAAATCTTTGGGCCAGTAATGGCACTAATGAAGT TCAAAACTGTGGAGGATGCGATAAAATCGGCCAACAACACGAGGTATGGATTAGCAGCAGGGATAGTGACCAGGAACATGGACATATCAAACACTGGTGG CAAGATCTATAAGAGCAGGAGTGATATGGATAAACTGTTACTTTGCATGTGA
AA sequence Show only first row Show all	>Lus10024260 pacid=23175728 polypeptide=Lus10024260 locus=Lus10024260.g ID=Lus10024260.BGIv1.0 annot-version=v1.0 MQATATSNLKQVSLELGGKSPLLIFNDADIDAAADLALLGILFNKGEVCVASSRVFVQEGIYGEFVTKLVEKVKDWVVGDPSNLNSRLGPQVDKKQYEKI MSYIEHGKRQGATLEDMMVAQDEIFGPVMALMKFKTVEDAIKSANNTRYGLAAGIVTRNMDISNTGGKIYKSRSDMDKLLLCM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10024260 [exp]	0	1
AT5G39160			RmlC-like cupins superfamily p...		Lus10034254 [exp]	1.0	1.0000
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10002831 [exp]	1.4	0.9997
AT3G08990			Yippee family putative zinc-bi...		Lus10004823 [exp]	3.0	0.9960
AT4G39830			Cupredoxin superfamily protein...		Lus10009603 [exp]	4.0	0.9928
AT3G25910			Protein of unknown function (D...		Lus10026800 [exp]	5.7	0.8678
					Lus10009892 [exp]	6.3	0.9801
AT5G58850	MYB	ATMYB119	myb domain protein 119 (.1)		Lus10018220 [exp]	7.5	0.9602
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	7.9	0.9651
AT5G36930			Disease resistance protein (TI...		Lus10030498 [exp]	8.5	0.9593
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	8.5	0.9661

Compare expression of checked genes

Lus10024260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.