Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03940 939 / 0 Protein kinase family protein (.1) AT5G18190 932 / 0 Protein kinase family protein (.1) AT3G13670 886 / 0 Protein kinase family protein (.1) AT2G25760 884 / 0 Protein kinase family protein (.1.2) AT3G03930 333 / 1e-107 protein kinase-related (.1) AT3G24503 228 / 1e-65 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT4G26100 199 / 9e-56 CKL1, CK1 casein kinase 1 (.1) AT4G28540 196 / 3e-54 CKL6, PAPK1 casein kinase I-like 6 (.1) AT1G03930 194 / 1e-53 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT4G14340 192 / 3e-53 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023628 [exp] 1224 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10011091 [exp] 1127 / 0 AT5G18190 970 / 0.0 Protein kinase family protein (.1) Lus10042455 [exp] 913 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10026214 [exp] 906 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10039203 [exp] 900 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10005479 [exp] 882 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10025827 [exp] 872 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10014152 [exp] 842 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 832 / 0 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034500 [exp] 957 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.001G009700 [exp] 915 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.003G215700 [exp] 907 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.018G046400 [exp] 902 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 898 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.001G189100 [exp] 870 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.003G049700 [exp] 862 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.018G075000 [exp] 251 / 5e-74 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.018G065900 [exp] 199 / 1e-55 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 197 / 9e-55 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10024261 pacid=23175745 polypeptide=Lus10024261 locus=Lus10024261.g ID=Lus10024261.BGIv1.0 annot-version=v1.0 ATGCCAGATTTGCAAGTTGGAGTTCGACGATCACAGAGGGTCAGAAATAACCAGAACCCTGCTGGTGTAGTTGCTACTGCAACGCGTGGTGGTAGAAGAG GACGTGGTAGAGGAAGGGGGTCCAGAGTGATGAATCAAGATGAAAATGCCAACTTTTTGGGAACTGGCATACGCGATCAAGCCCGACCAGGATTGGAATT GCCAGTACGGCAACCAGTTGAAAGAAGTGCTGAAAAGTTGGTAGTAGGTGAAGAGGAAGGGAGCACAAGTCCCATACCTGAACGGGTGAAACTTGGCAAT TCACCAGTATTTAAAATAGATAGAAAGCTTGGTAAGGGAGGCTTTGGACAAGTTTATGTTGGAAGAAGGATGCAAGGTGGTTCGGGGCGTTCAGGGCCTG ATGCGTATGAGCTTGCGTTGAAATTTGAGCACAAAAACAGTAAAGGATGCAATTACGGTCCTCCGTATGAGTGGCAAGTGTATAGCTCCCTTAATGGTTG CTATGGGCTTCCTTTAGTTCATTACAAAGGTCAACAAAACGATTACTATATCCTTGTAATGGACATGCTGGGGCCTAGCCTATGGGATGTTTGGAACTCC AACAATCAAATGCTGTCTGAACAGATGGTTGCTTGTATAGCAGTGGAGGCAATATCTATTTTAGAACAGCTGCACTCCAGAGGCTTTGTGCACGGAGATG TCAAGCCAGAGAACTTTTTGCTTGGTCAGCCTGGAACACCTGAAGAGAAGAAACTTTATCTAGTGGATCTTGGTTTGGCTTCAAGGTGGAAGGATTCAAC GTCCGGTGGCCATGTAGATTATGACCAAAGGCCTGATGTTTTCAGAGGCACTGTTCGCTATGCAAGTGTACATGCACATTTGGGCAGGACAGGGAGCCGG AGGGATGACCTTGAGTCATTAGCGTACACCTTAGTATTTCTTCTTAGGGGAAAGCTTCCATGGCAAGGTTATGTTGGTGAAAATAAAAGTTTCCTTGTCA GTAAGAAGAAGATGGCTACTTCTCCGGAGATGCTTTGTTGCTTGTGCCCTGCTCCGTTTAAACATTTTCTTGAGATGGTGACTAATATGAAATTTGATGA AGAGCCGAATTATTCAAGGCTTATTTCCATTTTCGATAGCGTTTTAGGCTCTAATGTCTCATTACGACCCATCTTAACGGATGGGGCTATAAAGGTTGTT AACTGCGCAGGCCAAAAGAGGGGAAGGTCTCTTGTTGAGTTGGGGGATGAGGGTCAACTGAAAAAGAAAATTCGCCTCGGGACTCCTGCTACACAGTGGA TTTCAGTATACAATAATAGAAATTCAATGAAGCAGAGATACCACTATAATGTTGTGGACTTGAGGCTTGGCCAACATGTGGAGAAAGGAAGGGAAGATGG TTTGTTCATTAGCTGCGTCTCTTCATCTTCAAATCTCTGGGCCATCGTCATGGATGCAGGAACTGGGTTCTCTACCCAGGTCTATGAATTATCACCTGTT TTCTTGCCCAAGGAGTGGATAGTGGAACAGTGGGACAAAAACTTTTACATCACTTCCATCGCTGGCACAACTAATGGCACCTCTTTGGTAGTTATGTCTA AGGGAACTGCTTATACACAACAGTCATACAAAGTTAGCGATGCGTTTCCTTTCAAATGGATCAATAAAAAATGGAAAGAAGGTTTCTCTGTTACTTCAAT GACTAGTGCAGGAAGTAAGTGGGGAATTGTCATGTCCAGGAATGCAGGTTATACAAATCAGGTGGTTGAACTCGATTTCCTTTATCCAAGTGAAGGGATA CATAGGAGATGGGAGAATGGATATCGAATTACCTCATGTGCAGCTACAGCTGACCAGGCTGCATTCATTCTTAGCACACCCAAGAAGAAATCACCAGATG TCGCTCAAGAAACCTTGAGAACATCTGCCTTTCCTAGTACTCATGTTAAGTATCTTGAAGCTGCTGATTTAGAGGAGGCAATCCGTCTCCCAATCAAAAA ACAGACGTTGGAGACGAAGGATCCAAGAACAGGAGAAGTGATTGCAGAGGTAGCACAAGGAGAAAAAGAAGACATTGATTTGGCCGTCGAGGCTGCTCGC TACGCCTTCGACCATGTCCCCGCTTACCTGGCTCTGTACGAAAGAGCAAGCATGCACAAATTCGCGGACTTTAATCACGTGGAGGAACTGGCGAAACTGG ACACCCTTAACGCCGTCAAGTTGTTCAGCTGGGGAAAAGCAGTTGACATCCCTAACACCGCCACCAGTCTACGGTACTACGCCGGCGCCGCCAACAAAAT ACACGGTGAGGTATTGAAGATGTCCCGCGAGATGCATGCCTACACCCTCCAAGAACCCATTGGCGTGATGGGCCACATCATCCCTTGGAATTTTCCCAGC ACCATGTTTTTCGCTAAAGTCAGCCCTGCCCTGGCCACCGGATGTACCATGGTCGTTAAGCCCGCTGAGCAAACCCCTCTTTCTGCCTTGTTCTACGCTC ATTTGGCAAAACAGCCACACACTAAACCTACCAAGTGTGCTAGTATCTTCCTAAAGAGGTTGTATTGTCCTATAAATATGAACCCTCACTTTAGGCAAGT GTGA
AA sequence Show only first row Show all	>Lus10024261 pacid=23175745 polypeptide=Lus10024261 locus=Lus10024261.g ID=Lus10024261.BGIv1.0 annot-version=v1.0 MPDLQVGVRRSQRVRNNQNPAGVVATATRGGRRGRGRGRGSRVMNQDENANFLGTGIRDQARPGLELPVRQPVERSAEKLVVGEEEGSTSPIPERVKLGN SPVFKIDRKLGKGGFGQVYVGRRMQGGSGRSGPDAYELALKFEHKNSKGCNYGPPYEWQVYSSLNGCYGLPLVHYKGQQNDYYILVMDMLGPSLWDVWNS NNQMLSEQMVACIAVEAISILEQLHSRGFVHGDVKPENFLLGQPGTPEEKKLYLVDLGLASRWKDSTSGGHVDYDQRPDVFRGTVRYASVHAHLGRTGSR RDDLESLAYTLVFLLRGKLPWQGYVGENKSFLVSKKKMATSPEMLCCLCPAPFKHFLEMVTNMKFDEEPNYSRLISIFDSVLGSNVSLRPILTDGAIKVV NCAGQKRGRSLVELGDEGQLKKKIRLGTPATQWISVYNNRNSMKQRYHYNVVDLRLGQHVEKGREDGLFISCVSSSSNLWAIVMDAGTGFSTQVYELSPV FLPKEWIVEQWDKNFYITSIAGTTNGTSLVVMSKGTAYTQQSYKVSDAFPFKWINKKWKEGFSVTSMTSAGSKWGIVMSRNAGYTNQVVELDFLYPSEGI HRRWENGYRITSCAATADQAAFILSTPKKKSPDVAQETLRTSAFPSTHVKYLEAADLEEAIRLPIKKQTLETKDPRTGEVIAEVAQGEKEDIDLAVEAAR YAFDHVPAYLALYERASMHKFADFNHVEELAKLDTLNAVKLFSWGKAVDIPNTATSLRYYAGAANKIHGEVLKMSREMHAYTLQEPIGVMGHIIPWNFPS TMFFAKVSPALATGCTMVVKPAEQTPLSALFYAHLAKQPHTKPTKCASIFLKRLYCPINMNPHFRQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03940			Protein kinase family protein ...		Lus10024261 [exp]	0	1
AT5G04460			RING/U-box superfamily protein...		Lus10037928 [exp]	2.2	0.8417
AT4G32600			RING/U-box superfamily protein...		Lus10017750 [exp]	3.0	0.8055
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	3.2	0.8129
AT1G05170			Galactosyltransferase family p...		Lus10020042 [exp]	5.5	0.8017
AT5G04460			RING/U-box superfamily protein...		Lus10017455 [exp]	6.0	0.8046
AT1G33360			ATP-dependent Clp protease (.1...		Lus10040561 [exp]	8.7	0.7867
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10000778 [exp]	8.7	0.7231
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10020928 [exp]	9.9	0.7868
AT3G03940			Protein kinase family protein ...		Lus10023628 [exp]	10.7	0.7796
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	12.3	0.7978

Compare expression of checked genes

Lus10024261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.