Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13270 197 / 2e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G52330 127 / 3e-36 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT3G44380 49 / 4e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G54200 44 / 4e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023631 [exp] 317 / 2e-110 AT4G13270 235 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043216 [exp] 233 / 2e-77 AT4G13270 228 / 8e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10011095 [exp] 233 / 2e-77 AT4G13270 234 / 3e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10011458 [exp] 108 / 9e-29 AT1G52330 168 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10037534 [exp] 107 / 2e-28 AT1G52330 160 / 2e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10018361 [exp] 63 / 4e-12 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006764 [exp] 61 / 4e-11 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007649 [exp] 56 / 2e-09 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020060 [exp] 54 / 9e-09 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G159400 [exp] 172 / 6e-54 AT4G13270 228 / 3e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G180600 [exp] 144 / 2e-42 AT1G52330 192 / 9e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.003G055000 [exp] 134 / 1e-38 AT1G52330 181 / 1e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.002G230400 [exp] 51 / 6e-08 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 51 / 1e-07 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 50 / 2e-07 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 48 / 1e-06 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G218400 [exp] 47 / 3e-06 AT3G44380 229 / 1e-77 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 46 / 4e-06 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 40 / 0.0008 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10024264 pacid=23175802 polypeptide=Lus10024264 locus=Lus10024264.g ID=Lus10024264.BGIv1.0 annot-version=v1.0 ATGCCGTCGTCGAAGACCACCTCCGTCGGAGACTCCCCGCCGGATTCAGTGCCCTACACCGCTCTCCCCGCTGACTATCCTCCAAACTACATCCTTCTCC CTTACTACCGCCCACCTCCACCTAACCCTATCCTGCTCTTCTTCCGCCGATGCCTCGCCTTCACCGTTGTCATTCTCCTCCTCTCCTCCGCCGTCTTCTT CCTCTACCCTTCCGACCCAGATATCACCGTCCTCCGGGTCAGGATCAACCGCATCCAAGTCCATTCCTCCCCCAAGCTCACCCTCGACATCTCGTTATCC CTCACCGTCAAGGTTCGCAACCCGGACGTCTTCTCCCTCGATTACGACTACCTGTCTGTGTCAATCGGGTACAGAGGGAGGCAGCTTGGCGTCGTGAGAT CGCAGGGAGGGAGCGTTAAGGCCAGAGGATCTTCCACCGTTTACGCCACGCTTGATTTGAACGGCCTCGAGTTCGTTTGGGATTCGTTCTACTTGATCGA GGATTTGGCTAAGGGAGTCGTCCCTTTCGATACAATGACCACGGTCAGCGGCGATTTAGGTCTCTTGTTCTTTACAATTCCTATCGAGGCAAGCACTCCA ACAATGGGAATTATTCAATTCTGTCAATTTGGTGCTTACATTTATGTTTTGGTAGAATCGGAAAAGTTAGGGTTTGGTGGATATTTTGGTAAAACCTTTT GA
AA sequence Show only first row Show all	>Lus10024264 pacid=23175802 polypeptide=Lus10024264 locus=Lus10024264.g ID=Lus10024264.BGIv1.0 annot-version=v1.0 MPSSKTTSVGDSPPDSVPYTALPADYPPNYILLPYYRPPPPNPILLFFRRCLAFTVVILLLSSAVFFLYPSDPDITVLRVRINRIQVHSSPKLTLDISLS LTVKVRNPDVFSLDYDYLSVSIGYRGRQLGVVRSQGGSVKARGSSTVYATLDLNGLEFVWDSFYLIEDLAKGVVPFDTMTTVSGDLGLLFFTIPIEASTP TMGIIQFCQFGAYIYVLVESEKLGFGGYFGKTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13270			Late embryogenesis abundant (L...		Lus10024264 [exp]	0	1
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10041328 [exp]	2.4	0.8181
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10011874 [exp]	3.5	0.8104
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Lus10013993 [exp]	3.7	0.8137
AT4G13270			Late embryogenesis abundant (L...		Lus10023631 [exp]	4.5	0.7994
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10022807 [exp]	5.5	0.7964
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10022789 [exp]	6.0	0.7791
AT5G60800			Heavy metal transport/detoxifi...		Lus10016133 [exp]	8.0	0.7824
AT1G78190			Trm112p-like protein (.1)		Lus10024634 [exp]	8.1	0.7406
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	8.5	0.7872
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10013814 [exp]	14.5	0.7755

Compare expression of checked genes

Lus10024264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.