Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 46 / 1e-05 Aminotransferase-like, plant mobile domain family protein (.1) AT5G18510 42 / 0.0005 Aminotransferase-like, plant mobile domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000686 [exp] 198 / 1e-63 AT1G17930 87 / 3e-20 Aminotransferase-like, plant mobile domain family protein (.1) Lus10012087 [exp] 194 / 4e-61 AT1G17930 57 / 4e-09 Aminotransferase-like, plant mobile domain family protein (.1) Lus10027047 [exp] 172 / 1e-49 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10020970 [exp] 169 / 2e-49 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1) Lus10034059 [exp] 149 / 2e-45 AT1G48120 43 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1) Lus10001981 [exp] 152 / 1e-44 AT1G17930 61 / 2e-10 Aminotransferase-like, plant mobile domain family protein (.1) Lus10040026 [exp] 144 / 2e-43 AT1G48120 45 / 3e-06 hydrolases;protein serine/threonine phosphatases (.1) Lus10000980 [exp] 139 / 4e-41 AT1G17930 56 / 9e-10 Aminotransferase-like, plant mobile domain family protein (.1) Lus10003272 [exp] 138 / 3e-40 ND 39 / 0.002
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10024265 pacid=23175793 polypeptide=Lus10024265 locus=Lus10024265.g ID=Lus10024265.BGIv1.0 annot-version=v1.0 ATGCCGTGGGGAGAGATGACGATCACTTTGCACTACGTCTTCCACATTCTCCAGGTCCCGGTCACTGGACGACCGCTTCATAAGCCCCGACCTCTGGTTG ACTTGAGAGCGGGTGTAGCGGAGGCGCTTGGCTTCAGCTCAGCTGCTGCGTTGGAGTACGCGGTCAGGGGGGAGACGGTTGGGCCAATGCCGATTGCAGG GTGTGTGACGTTGCTTCAGTCCTGGATCTACGAGTACTTCTCGAGTGTGAGGCCTCCGAGGACACTTAGACAGGAGCGTAGGGCAGGAGAGGCTTTAGCT GGTAGGTGGGACAGTGCCGAGACACCTAGTCGGGGTGTCGGGTTCCTACGAGAGAGGTTGGACTACTACCGTCGCCTCCTCGATAACATGGATTCCCGTG ATGTTTGTTGGCTTCCTTTTGGGCCGCATCCTGACATTGAGGTCCCCGTGTCGACTTTCTGTGGTCTCATCCGCTGCGCCGACGTAGGTGAGTACTACGA TTCCTATCGTGTACTCCGACAGTTTGGGTACATACAGGTTGTCCCTCCCTCGATTGCTGTGCCGCTGCGGGCTGTTAGGGCCCGCGNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGTTCCTCGAGCATAGTCACCCACGCATCGTGGCGCCGGCTAACCCCAGT GTGGGAGTCCCGGCTGAGCTGGTAA
AA sequence Show only first row Show all	>Lus10024265 pacid=23175793 polypeptide=Lus10024265 locus=Lus10024265.g ID=Lus10024265.BGIv1.0 annot-version=v1.0 MPWGEMTITLHYVFHILQVPVTGRPLHKPRPLVDLRAGVAEALGFSSAAALEYAVRGETVGPMPIAGCVTLLQSWIYEYFSSVRPPRTLRQERRAGEALA GRWDSAETPSRGVGFLRERLDYYRRLLDNMDSRDVCWLPFGPHPDIEVPVSTFCGLIRCADVGEYYDSYRVLRQFGYIQVVPPSIAVPLRAVRARXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSSIVTHASWRRLTPVWESRLSW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17930			Aminotransferase-like, plant m...		Lus10024265 [exp]	0	1
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028513 [exp]	8.2	0.7096
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030598 [exp]	19.8	0.6730
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10006555 [exp]	20.7	0.6848
AT3G10530			Transducin/WD40 repeat-like su...		Lus10032289 [exp]	21.6	0.6843
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	24.7	0.6620
					Lus10011739 [exp]	27.7	0.6685
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10019356 [exp]	34.0	0.5887
AT5G59980			Polymerase/histidinol phosphat...		Lus10042842 [exp]	45.7	0.6602
					Lus10017807 [exp]	48.4	0.6406
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10000433 [exp]	54.3	0.6165

Compare expression of checked genes

Lus10024265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.