Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19600 522 / 0 pfkB-like carbohydrate kinase family protein (.1) AT5G03300 66 / 9e-12 ADK2 adenosine kinase 2 (.1) AT4G27600 61 / 5e-10 NARA5 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) AT3G09820 59 / 2e-09 ADK1, ATADK1 adenosine kinase 1 (.1.2) AT4G10260 54 / 8e-08 pfkB-like carbohydrate kinase family protein (.1) AT1G17160 52 / 3e-07 pfkB-like carbohydrate kinase family protein (.1.2) AT1G66430 51 / 7e-07 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 42 / 0.0007 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007397 [exp] 729 / 0 AT1G19600 518 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026867 [exp] 75 / 2e-14 AT4G27600 585 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Lus10013645 [exp] 74 / 4e-14 AT4G27600 580 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Lus10023197 [exp] 57 / 7e-09 AT5G03300 590 / 0.0 adenosine kinase 2 (.1) Lus10040417 [exp] 52 / 3e-07 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10023532 [exp] 52 / 3e-07 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10009220 [exp] 51 / 8e-07 AT5G03300 501 / 7e-176 adenosine kinase 2 (.1) Lus10028517 [exp] 49 / 2e-06 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 47 / 1e-05 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G034000 [exp] 575 / 0 AT1G19600 556 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.005G229100 [exp] 568 / 0 AT1G19600 558 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.013G078600 [exp] 72 / 1e-13 AT4G27600 588 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Potri.010G224300 [exp] 61 / 3e-10 AT5G03300 620 / 0.0 adenosine kinase 2 (.1) Potri.008G038100 [exp] 58 / 3e-09 AT5G03300 622 / 0.0 adenosine kinase 2 (.1) Potri.004G089300 [exp] 56 / 1e-08 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.011G114100 [exp] 50 / 1e-06 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2) Potri.017G126300 [exp] 48 / 5e-06 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.009G046200 [exp] 43 / 0.0003 AT5G58730 432 / 6e-152 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 42 / 0.0005 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10024268 pacid=23174949 polypeptide=Lus10024268 locus=Lus10024268.g ID=Lus10024268.BGIv1.0 annot-version=v1.0 ATGGGAGCTGAAGGACTGCTGCAGACCTCAAGGAAAGGTGAGATTGCTCCTCACCGCCCTCTAATTCTCGGACTTCAGCCGGCGGCCCTCGTTGACCACG TGGCTCGCGTCGATTCGTCCTTGCTGGATCAAATCCCCGGCGACCGCGGCGGCTCTATTCCTGTTGCAGTTGAAGAGCTCGAGTTTATACTGAAGGAGGT GAAGACTCACATACTTGCCTCTCCTCCTAATAGTTGTTCCTCTTTAGTGAAGACAATTGCAGGAGGAAGCGTGGCCAATACGATCCGGGGCCTGAGTTCT GGTTTCGGGTTGTCTTGTGGGATCATCGGGGCTTGTGGGGATGATGATCAAGCTAAGCTGTTCGTTAGCAATATGACCTTTCATGGAATTAACCTATCAA GGTTGAGATCCAAGAAGGGACTTACAGCACAGTGCGTTTGCCTTGTGGATGGGTTGGGAAATCGGACCATGCGACCTTGCCTCTCAAATGCTGTCAAAGT TCAGGGTGATGAATTGGCTAATGACGATTTCGTCGGCTCCAAGTGGCTGATAATGAGGTATTCCATATTCAATCTGGAGGTTATCAAAGCAGCAATAAGG GTTGCAAAGCTAGAGGGTGTTTCAGTTTCATTGGATTTAGCTAGTTTTGAGATGGTTAGGAACTATAGATTACCTCTAATGGAATTGCTTCAATCTGGAG ATGTAGACCTCTGTTTTGCTAATGAAGATGAAGCAACGGAGCTACTCAGAGGGGAGGAAAATGGTGATCATGAAGCAGCACTTGAATTCTTGGCCAAACA CTGCCAATGGGCTGTAGTGACACTTGGTGCAAATGGCTGCATCGCAAAGCATGGAAAAGAGGTTGCTCGAGTTGCAGCAATCGGAGAATCAAAAGCAGTT GATGCTACTGGAGCAGGGGACCTTTTCGCAAGTGGGTTCCTGTACGGACTGACAAAGGGGTTGTCTCTTGAGGAGTGCTGTAAGATTGGTACATGCAGCG GTGGCTCTGTGATTCGGTCTCTTGGAGGTGAAGTGACTCCAGAGAATTGGCAATGGATGTACAGGCAAATGCAAGGCAAGGGCCTCCCAGTTCCGGAAAT CCGCAATTAA
AA sequence Show only first row Show all	>Lus10024268 pacid=23174949 polypeptide=Lus10024268 locus=Lus10024268.g ID=Lus10024268.BGIv1.0 annot-version=v1.0 MGAEGLLQTSRKGEIAPHRPLILGLQPAALVDHVARVDSSLLDQIPGDRGGSIPVAVEELEFILKEVKTHILASPPNSCSSLVKTIAGGSVANTIRGLSS GFGLSCGIIGACGDDDQAKLFVSNMTFHGINLSRLRSKKGLTAQCVCLVDGLGNRTMRPCLSNAVKVQGDELANDDFVGSKWLIMRYSIFNLEVIKAAIR VAKLEGVSVSLDLASFEMVRNYRLPLMELLQSGDVDLCFANEDEATELLRGEENGDHEAALEFLAKHCQWAVVTLGANGCIAKHGKEVARVAAIGESKAV DATGAGDLFASGFLYGLTKGLSLEECCKIGTCSGGSVIRSLGGEVTPENWQWMYRQMQGKGLPVPEIRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19600			pfkB-like carbohydrate kinase ...		Lus10024268 [exp]	0	1
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Lus10020143 [exp]	8.9	0.8612
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	12.0	0.8709
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10032525 [exp]	16.0	0.8659
AT4G18260			Cytochrome b561/ferric reducta...		Lus10028131 [exp]	19.2	0.8370
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10029137 [exp]	20.6	0.8674
AT5G47550			Cystatin/monellin superfamily ...		Lus10010495 [exp]	22.6	0.8620
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10004099 [exp]	23.7	0.8592
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10035184 [exp]	26.3	0.8527
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	30.3	0.8623
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	31.3	0.8478

Compare expression of checked genes

Lus10024268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.