Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47250 441 / 2e-158 PAF2 20S proteasome alpha subunit F2 (.1) AT5G42790 441 / 2e-158 ARS5, ATPSM30, PAF1 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) AT3G14290 154 / 8e-46 PAE2 20S proteasome alpha subunit E2 (.1) AT1G53850 152 / 2e-45 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT3G22110 149 / 4e-44 PAC1 20S proteasome alpha subunit C1 (.1) AT1G16470 144 / 2e-42 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 143 / 8e-42 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT5G35590 135 / 1e-38 PAA1 proteasome alpha subunit A1 (.1) AT5G66140 131 / 6e-37 PAD2 proteasome alpha subunit D2 (.1) AT2G05840 130 / 1e-36 PAA2 20S proteasome subunit PAA2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007396 [exp] 488 / 4e-177 AT5G42790 442 / 8e-159 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10007395 [exp] 416 / 9e-149 AT5G42790 370 / 1e-130 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10042145 [exp] 152 / 5e-45 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10004235 [exp] 141 / 2e-41 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10036210 [exp] 140 / 1e-40 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10017135 [exp] 140 / 2e-40 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10037454 [exp] 144 / 2e-39 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10003936 [exp] 144 / 3e-39 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10037416 [exp] 133 / 1e-37 AT2G27020 478 / 1e-173 20S proteasome alpha subunit G1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G033900 [exp] 472 / 1e-170 AT5G42790 449 / 1e-161 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Potri.005G229200 [exp] 466 / 2e-168 AT5G42790 455 / 9e-164 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Potri.006G008800 [exp] 153 / 2e-45 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.016G015400 [exp] 152 / 3e-45 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.001G162900 [exp] 152 / 4e-45 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.012G123550 [exp] 146 / 4e-43 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 146 / 4e-43 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.003G072500 [exp] 146 / 5e-43 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.009G020800 [exp] 133 / 1e-37 AT2G27020 453 / 5e-164 20S proteasome alpha subunit G1 (.1) Potri.001G224100 [exp] 133 / 1e-37 AT2G27020 457 / 3e-165 20S proteasome alpha subunit G1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0052 [flax] [poplar] NTN PF10584 [flax] [poplar] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Lus10024269 pacid=23175046 polypeptide=Lus10024269 locus=Lus10024269.g ID=Lus10024269.BGIv1.0 annot-version=v1.0 ATGTTCAGGAATCAGTATGATACGGACGTGACCACATGGAGCCCAGCGGGAAGGCTGTTCCAGGTGGAGTACGCGATGGAGGCAGTGAAGCAAGGCTCCG CCGCAATTGGTCTCCGATCCAAGACCCACGTTGTCCTGGCTTGCCTCAATAAGGCCAACTCCGAGCTCTCTTCCCACCAGAAGAAGATTTTCAAGGTCGA CGACCACATCGGAGTTGCCATTGCTGGACTCACCGCTGACGGCCGCGTGCTTTCGCGCTATATGCGATCTGAATGTATCAATTACAGTTTCACCTACGAG TCACCCCTTCCCGTCGGCCGTCTCGTTGTTCAACTCGCTGACAAGGCGCAGGTCTGCACTCAGCGGTCTTGGAAACGGCCTTATGGTGTTGGTCTGTTGG TAGCTGGGTTGGATGAATCAGGGGCACATCTCTACTACAACTGCCCAAGTGGAAACTACTTCGAATATGAGGGTTTTGCCATAGGTTCCCGTTCACAAGC TGCAAAGACTTACTTGGAGCGGAGGGTTGAGAGCTTCATGGAGTCTTCCCGAGATGATCTTGTCAAGGATGCTTTAATTGCAGTTAGAGAAACCTTACAG GGAGAGACTCTCAAGAGTTCCATCTGCACGGTTGCTGTGGTTGGAGTTGGTGAGGCATTTCACGTTCTAGATCAAGACACAGTACAGCAACTGATCGATG CATTTGAAATTGTGAAGGAGCCAGAGGCACCTGTCGCTGAGCCTGATGCCGATGCTGATCCTCCTGCCGAAGGGGCAGCGCCAATGGACATATGA
AA sequence Show only first row Show all	>Lus10024269 pacid=23175046 polypeptide=Lus10024269 locus=Lus10024269.g ID=Lus10024269.BGIv1.0 annot-version=v1.0 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACLNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSFTYE SPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYEGFAIGSRSQAAKTYLERRVESFMESSRDDLVKDALIAVRETLQ GETLKSSICTVAVVGVGEAFHVLDQDTVQQLIDAFEIVKEPEAPVAEPDADADPPAEGAAPMDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10024269 [exp]	0	1
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Lus10020180 [exp]	1.0	0.9102
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10041288 [exp]	1.4	0.8923
AT3G54400			Eukaryotic aspartyl protease f...		Lus10039503 [exp]	2.4	0.8289
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10036874 [exp]	4.2	0.8431
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10012715 [exp]	6.9	0.8219
AT2G32450			Calcium-binding tetratricopept...		Lus10010627 [exp]	8.4	0.8300
AT3G51010			unknown protein		Lus10028346 [exp]	9.3	0.7621
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	10.8	0.8218
AT1G61150			LisH and RanBPM domains contai...		Lus10018464 [exp]	13.5	0.8096
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10022326 [exp]	14.0	0.8304

Compare expression of checked genes

Lus10024269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.