Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75310 212 / 2e-55 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT4G36520 209 / 1e-54 Chaperone DnaJ-domain superfamily protein (.1) AT4G12770 171 / 2e-43 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12780 170 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G21660 164 / 1e-42 Chaperone DnaJ-domain superfamily protein (.1) AT1G75100 126 / 1e-29 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G30280 96 / 4e-20 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007394 [exp] 1538 / 0 AT4G36520 284 / 2e-78 Chaperone DnaJ-domain superfamily protein (.1) Lus10033205 [exp] 654 / 0 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1) Lus10010642 [exp] 654 / 0 AT1G75310 261 / 8e-71 auxilin-like 1, auxin-like 1 protein (.1) Lus10041769 [exp] 205 / 2e-53 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10012303 [exp] 176 / 9e-45 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016079 [exp] 175 / 2e-44 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012302 [exp] 172 / 7e-43 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 160 / 2e-39 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10028548 [exp] 133 / 8e-32 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229300 [exp] 248 / 7e-67 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G033800 [exp] 243 / 3e-65 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G120700 [exp] 224 / 3e-59 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 220 / 4e-58 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G217200 [exp] 192 / 6e-50 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.014G197600 [exp] 187 / 4e-48 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G079200 [exp] 152 / 2e-38 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 146 / 2e-36 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G081500 [exp] 131 / 1e-31 AT1G30280 228 / 2e-69 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 114 / 2e-25 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024270 pacid=23174978 polypeptide=Lus10024270 locus=Lus10024270.g ID=Lus10024270.BGIv1.0 annot-version=v1.0 ATGGAGCTCGGGTCTAGAGTGGTGGATTACAGGGAGATATTCGCTCGCTCGGGGACGTCGTCTATCCCCATGCTCGATGTTCCCGAGCTGAACGAAAGGA AGGGTTGCGTTGATTCGCGGAGCTCCAGACCGGATTACACGAAGATATTTGGTGGATTCGGAGAAGCGGACTTTGCTATGCCTTACGATGAGTTGATTTC AAGAGCGGAGAAGGAAATGAACTCTTCTCGAGCAACTCGGGCTTCAGCTAATTCAAGCTCAGAGCTCGATCAACCAAGTTTTGCTGAAAGGAGGAGAATG TCAGCAGAAGCCTCTGTTCAATCATTGGATGGTCGGAAACATGTCAACGTTTCCTATCATAAAACAAACTCAGGAGGCAGAATGGGGAGAAGTGGCATGA CACACATTGCTCAGCTTCATGCTGTCTCTGGCTATAGTCGTTTAGTTGATGAAAATGTCAGCGAGGAGATGAGGGAAGACAGGTCCTATCGGAAAACTTA TTCGGGTTCACTCCTCTTCAACAATGCCTCAGGACGACAGCATGGGGAACATCACAGAACGTTCAGTTCCATGTCAAATGACGTATCGTTTGATGTTCAT CGAGGTGCACATCCACCTGGAACATCGTCTCCAAGCTCCCCTCTCTCTTTGGCTAATGAGAAGGGCACTACTTCCAACAAATCCATGAAATCTAAACTTG GTATTCGGAAAAGTGCCGGTGGAAGTTCTTCGCCACCGATTTTGGATGATGAAGTGAATGCAAATTCAACTGCTGCTGCCTCTGCTGCTGCAGTGAGAAA AGCAATAGATGAAGCTCAAGCAAAAATCAAATTCGCAAAAGCGCTAATGGAAAGGAAAAAGGATGGCCGTTCAAGACGGAAGGTCAACTATGAGGTGACA TATGAGAAAATGGAGGCTAAGTCTCCAGAAAAATGTAAATACAAAGAGGACGCTGAGGTATCATACGTTAGAGATGATATGCCAAAGAAGCAAGATTCCA GTGGCTCGTTGGTAGAAGATTCCGCAGAAGCCTGCCCAGTGATTTCCAATGCGACTGAAGTTTTTATTGCTAGGCCTGCTAATGCAGTAACTAACAATAA AGAAGCTACATTTACTCAACTTGATTGTGGACGGGAGGAAACAAAAATGAGCAAATCATTACAGGAGTTCCCCGAAGCTATTCGTATCAGTGGGGACAAG CCATCAACGTCAGAGTTTGAGCAAGATGTCAAGGTAAAGAAAGTGACGCCAAGTATTTTTGAAAACAAATGGAAGGAGAAGATGAAAGCATCCATTTTAC AGGACAAATTTGAAAATATAATGAGAATGCTACGGGGACCAGCAGAAATTCCAGATGTTGAAGTACAGTTGCTGCAGGGGAAAAATCTTGATGGTTTAGA CAAAGGCCTAGAGGAGATAGGAAGTGACGAGAAACAAGGGGGAGGTCACACTGAAGAGGGAGTCAAAGGTGGGTCAAATAAAGGTATAGCAAGAGAAGAG GATGAGAGCGCAGTTAAAGTTAATTCCTGGCTGAATGACATTGAGAAGGTACAGAAGGAACATATAGATGATCAGAATGTGGGACAAATTGAGAAGAACC AAAGTGTTGGTGTGAGGGAAGATGAAGCGCTGAGTACTTCAGGTGAAATTTGTGCAGGAGAAACATTACAAGTTAAGTTTGGTCATGTTGATCTAGAGAC TGCAGGTGAAGATAGGGAGGAAGTAAGAGAAACGCTCGAGAAGGGAAAAGAGAAAAAGATTCAGGTCGATGAGGATGAGGATGATGGCATAGGAACTAGT GGTGGGCAAGAAAACTTTCCAGAACATGCGGACACTGAGAGATCAGAATCCGATGTTCATCAGAAGTCAGAAGATGAAGAAAGCGACAAGGTCATGCAAG AGATTCCTAGACCACTGAATGATAATATTGAAGTGGCTCCATTGTCGTGCAAGCCAGATGATGGTGACAGTGTAGACAAGATTTATGAAGCTCCTAGTTT CGTTGACAATGCAACCAACACATTCTCTGGCCTTAAACAGATTGGAACCGAATCAGAAAAAGTTGAAGAGGCAGATAACTCGGAGGAAGAGGAGGATTCT GCAAGGTTTGGCCGGACTACTAGTTTCAGTGGGTGTGATGGGATCGGGGAACAAAGGGATGAGCAAGATGAGCGATCTCAGCCCCTTATCGTTGATGAAA ACGGGGAATGTTCTAGTGGAGTTGCCTTCAACTTTGATGGACAGAAAACTGAAGATAGTGCAAAAATATCTGAAGAAACTTGCTGTCCGGAAAATTATGT TGTAGACGAGGCAACAACTCAATCAGAAGAAGTCAAAGAGAATGTCGATGATGCTGAAGTTGGCAGCACAGGTGAATCAACTAATAATAGTTTTACCTCT CTATGCGAGGAGAAGGTTTCACCAGATGGGAAATGCAGAGCAAATCATGTAGAGGGAGCTACTTGTAAATTGGAAGAACCTGATAAGGAAACTGTGTTTA ACAGTACATTATTGGATGACGAGAGATTATGCGAGGATGCAATGGGTACGAGCACAAGTCAGCAATCTACAGTGCCCGAGAAGGAAGAAGCTGCAGGGGT GTCTTCATATGAGAAAACAGGTGAAAATGTCGTTGACAAAACTGAGGGAGCTGTTGACGAGACCCAGCAGACACAAAAGAGAGTAGATAAACAGATCCCA CAAAAGGACGACGTGGATATGGAAAGGCAGCAGAGATCGATCAAAAAGGAAGTGGTTAATGAGAAGGACATAGAAATGGAAAAACAGAGAATAGCTGTGG AAAGAGCAATACGGGAAGCTCGTGAGAGAGCATTTGCTGAAGCTCGAGAGAAAGCAGAAAAGGCAGCTGCAGAGAAAGATGCAGCAGGAGCTCAGCGAAG GGAAAAGGCTGCATTGGCTGCTCGAGAAAGGACTGCAAGAGCTAATGCAGCTGAGAAAGCTTCTACCGAAGCGAGACTCAAAGCTGAACGAGCTGCAGTC GAAAGAGCAACTGCAGAGGCTAGGGAACGAGCTTTGGAGAAAGCATTATCTGAGAAAGCTTCGCACAAACCTGCCACTTTCAAGGATGATAGAAGGTCCT CCACTACTTTCTTCCAGGATCAGCGATACAAAAGCTCAGCTTCTTCCCCCAGTCCAAGATATTCGAGTTCTTCTAACAATGCCATTCCTATGTCAACTGA TCTATCTGGTGGAGGAAACGTTGAATCATCTCAGAGGTCTAAAGCCTCTTTGGAGAAGCAGCAGCAAATGGCTGAGCGTGCGGCGAAAGCTCTGGCAGAG AAGAACATGCGCGATCTTCTTGGGCAGAAAGAGCAAGCTGAGAAAAATAGGCTAGCAGAGATTCTCGATGCCGAAATCAGAAGGTGGTCAAGTGGGAAAG AGAGGAACTTGCGTGTTCTGCTTTCAACTCTCCACTACATCCTTGGGCCGGACAGTGGCTGGCAGGCAATTCCTAGGACAGATCTGAACTCAGCTACTGC TGTAAGGAAAGCATACAAGAAGGCAACTCTTTTTGTTCATCCCGACAAGTTGCAGCAACGAGGGGCCAGCATTCGCCACAAGTATGTCTGCGAGAAGGTG TTCGAGCTTCTCAAGGATGCGTGGAACAGATTCAGTGCAGATGACCGGTAA
AA sequence Show only first row Show all	>Lus10024270 pacid=23174978 polypeptide=Lus10024270 locus=Lus10024270.g ID=Lus10024270.BGIv1.0 annot-version=v1.0 MELGSRVVDYREIFARSGTSSIPMLDVPELNERKGCVDSRSSRPDYTKIFGGFGEADFAMPYDELISRAEKEMNSSRATRASANSSSELDQPSFAERRRM SAEASVQSLDGRKHVNVSYHKTNSGGRMGRSGMTHIAQLHAVSGYSRLVDENVSEEMREDRSYRKTYSGSLLFNNASGRQHGEHHRTFSSMSNDVSFDVH RGAHPPGTSSPSSPLSLANEKGTTSNKSMKSKLGIRKSAGGSSSPPILDDEVNANSTAAASAAAVRKAIDEAQAKIKFAKALMERKKDGRSRRKVNYEVT YEKMEAKSPEKCKYKEDAEVSYVRDDMPKKQDSSGSLVEDSAEACPVISNATEVFIARPANAVTNNKEATFTQLDCGREETKMSKSLQEFPEAIRISGDK PSTSEFEQDVKVKKVTPSIFENKWKEKMKASILQDKFENIMRMLRGPAEIPDVEVQLLQGKNLDGLDKGLEEIGSDEKQGGGHTEEGVKGGSNKGIAREE DESAVKVNSWLNDIEKVQKEHIDDQNVGQIEKNQSVGVREDEALSTSGEICAGETLQVKFGHVDLETAGEDREEVRETLEKGKEKKIQVDEDEDDGIGTS GGQENFPEHADTERSESDVHQKSEDEESDKVMQEIPRPLNDNIEVAPLSCKPDDGDSVDKIYEAPSFVDNATNTFSGLKQIGTESEKVEEADNSEEEEDS ARFGRTTSFSGCDGIGEQRDEQDERSQPLIVDENGECSSGVAFNFDGQKTEDSAKISEETCCPENYVVDEATTQSEEVKENVDDAEVGSTGESTNNSFTS LCEEKVSPDGKCRANHVEGATCKLEEPDKETVFNSTLLDDERLCEDAMGTSTSQQSTVPEKEEAAGVSSYEKTGENVVDKTEGAVDETQQTQKRVDKQIP QKDDVDMERQQRSIKKEVVNEKDIEMEKQRIAVERAIREARERAFAEAREKAEKAAAEKDAAGAQRREKAALAARERTARANAAEKASTEARLKAERAAV ERATAEARERALEKALSEKASHKPATFKDDRRSSTTFFQDQRYKSSASSPSPRYSSSSNNAIPMSTDLSGGGNVESSQRSKASLEKQQQMAERAAKALAE KNMRDLLGQKEQAEKNRLAEILDAEIRRWSSGKERNLRVLLSTLHYILGPDSGWQAIPRTDLNSATAVRKAYKKATLFVHPDKLQQRGASIRHKYVCEKV FELLKDAWNRFSADDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10024270 [exp]	0	1
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008540 [exp]	1.0	0.9363
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10038048 [exp]	3.9	0.9169
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	5.3	0.9197
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042317 [exp]	5.5	0.9300
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	6.5	0.9148
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	7.6	0.9337
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10018680 [exp]	13.0	0.9062
AT1G34320			Protein of unknown function (D...		Lus10018317 [exp]	14.7	0.9157
AT5G11650			alpha/beta-Hydrolases superfam...		Lus10006043 [exp]	16.9	0.8707
AT4G31860			Protein phosphatase 2C family ...		Lus10026885 [exp]	18.2	0.8766

Compare expression of checked genes

Lus10024270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.