Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19640 280 / 1e-91 JMT jasmonic acid carboxyl methyltransferase (.1) AT4G36470 214 / 2e-66 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G11480 192 / 5e-58 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G66430 173 / 5e-51 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04380 173 / 1e-50 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G21950 169 / 2e-49 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38020 167 / 2e-48 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 166 / 1e-47 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G14060 140 / 2e-38 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55250 133 / 2e-35 AtIAMT1, IAMT1 IAA carboxylmethyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025993 [exp] 214 / 1e-65 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041776 [exp] 204 / 1e-62 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041380 [exp] 185 / 3e-55 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 169 / 9e-49 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 166 / 5e-48 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 164 / 5e-47 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 167 / 2e-46 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10043177 [exp] 130 / 3e-34 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10032569 [exp] 87 / 3e-19 AT5G55250 400 / 2e-139 IAA carboxylmethyltransferase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G230100 [exp] 305 / 5e-102 AT1G19640 389 / 1e-134 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022002 [exp] 243 / 1e-77 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022400 [exp] 238 / 8e-76 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G021300 [exp] 236 / 3e-75 AT3G11480 318 / 1e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022000 [exp] 228 / 5e-72 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G021400 [exp] 226 / 7e-71 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022402 [exp] 209 / 1e-64 AT3G11480 261 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G045900 [exp] 202 / 1e-61 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022200 [exp] 166 / 2e-48 AT5G04370 227 / 1e-71 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G104800 [exp] 157 / 1e-44 AT1G68040 328 / 4e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10024271 pacid=23174900 polypeptide=Lus10024271 locus=Lus10024271.g ID=Lus10024271.BGIv1.0 annot-version=v1.0 ATGGAGGTAGTTAAAGTACTTCACATGAAGCAAGGGAATGGCAACACCAGCTACGCCAACAACTCTACTCTCCAGGTTTCATCATACATATCCCCCCCAA CTCTCTCCCAAGCCAGCGGTGGAGGAAGCCATGAGAGGAATGTTGAAGTTGATGAATCATCCGGACCCAATGCATTACGAGTCGTGTCCGAAATAGTTGA AATCCTTCACGCTGAATGTGTAAAGACAGATCTACCCACGCCAGATCTCAATTTCTTTCTGAATGATCTTTTCTCCAACGACTTCAACAACATTTGCAAG TCGTTGCCCGAATTCTATAAAAGGTTGAAGGAGGAGACAGGAGAAATTGGTTGCTTTGTGTCAACCACGCCAGGTTCTTTCTACGGCAGATTGTTTCCAA AGAATAGCCTCCACCTAGTACACTCTTCCTCCAGCTTGCACTGGCTCTCACAGGTTCCAGCGAGTCTAGAATGTGGCCAAGTCGTCAACAAGGGACGGCT ATATCTATCCAAGAGTAGCCCCAGCCTAGTGATGGAAGCATATGCAAGGCAGTTCCAACATGATTTTTCACTCTTCCTAAGGTCACGTGCAGAGGAGCTC ATCGTGGGAGGTCACCTCGTCATGTCATTAATGGGTCGACCATCTAACGATCCAACTTCAGAAGTGGGCTGCCACTACCAGTGGGAGTTACTGGCCCACG TACTAATTACCATGATCGCTGACGGACTCACAAATGAAGAAAAGTTAGATTCCTTCAATGCTCCTTATTACGCTCCATCATTAGATGAAGTGAAGGCAGA GATCGAAAGAGAAGGATCGTTCTATGTCCATCGAATTGAGGCATTCAAGGTTGAATGGGACGGAGGAAGAGACGTAGCTAAGATGGAGAGTAGAGGAGAG ATGGTGGCAAAGACGGTTAGAGCGGTGGTGGAGTCGATGATTGAATCGCACTTCGGGGAAGGGATTGTTGATGAGCTGTTCAATCGGTATGCGGTGATCG TGGATGATTACTTGTCTAGGAATAAAGGTATCTATGTTAATTTGGTTGCTTCGTTAGTTAGGCATGTCTAA
AA sequence Show only first row Show all	>Lus10024271 pacid=23174900 polypeptide=Lus10024271 locus=Lus10024271.g ID=Lus10024271.BGIv1.0 annot-version=v1.0 MEVVKVLHMKQGNGNTSYANNSTLQVSSYISPPTLSQASGGGSHERNVEVDESSGPNALRVVSEIVEILHAECVKTDLPTPDLNFFLNDLFSNDFNNICK SLPEFYKRLKEETGEIGCFVSTTPGSFYGRLFPKNSLHLVHSSSSLHWLSQVPASLECGQVVNKGRLYLSKSSPSLVMEAYARQFQHDFSLFLRSRAEEL IVGGHLVMSLMGRPSNDPTSEVGCHYQWELLAHVLITMIADGLTNEEKLDSFNAPYYAPSLDEVKAEIEREGSFYVHRIEAFKVEWDGGRDVAKMESRGE MVAKTVRAVVESMIESHFGEGIVDELFNRYAVIVDDYLSRNKGIYVNLVASLVRHV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Lus10024271 [exp]	0	1
AT3G11600			unknown protein		Lus10034181 [exp]	1.0	0.8800
AT1G20823			RING/U-box superfamily protein...		Lus10016040 [exp]	8.0	0.8587
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10027171 [exp]	9.0	0.8551
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10014094 [exp]	10.8	0.8646
AT4G33040			Thioredoxin superfamily protei...		Lus10013519 [exp]	14.7	0.8557
AT1G67840		CSK	chloroplast sensor kinase (.1....		Lus10006470 [exp]	15.0	0.8556
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10005464 [exp]	15.2	0.8206
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10031540 [exp]	15.5	0.8568
AT1G07220			Arabidopsis thaliana protein o...		Lus10018239 [exp]	16.4	0.8531
AT3G23700			Nucleic acid-binding proteins ...		Lus10022587 [exp]	17.1	0.8677

Compare expression of checked genes

Lus10024271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.