Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19630 592 / 0 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT4G19230 243 / 4e-75 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 242 / 8e-75 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G19270 236 / 3e-72 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT3G13730 234 / 3e-71 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT2G29090 226 / 1e-68 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G05690 223 / 2e-67 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 219 / 2e-65 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT1G12740 210 / 2e-62 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G30180 207 / 1e-61 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018898 [exp] 309 / 3e-100 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10028594 [exp] 305 / 1e-98 AT5G45340 299 / 1e-96 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 252 / 2e-78 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10033308 [exp] 249 / 2e-77 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10014285 [exp] 240 / 6e-75 AT1G19630 249 / 2e-78 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Lus10034768 [exp] 241 / 5e-74 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10042652 [exp] 233 / 6e-71 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10033105 [exp] 228 / 4e-69 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10024495 [exp] 223 / 2e-67 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G033000 [exp] 610 / 0 AT1G19630 607 / 0.0 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Potri.002G069600 [exp] 306 / 2e-99 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.001G242600 [exp] 237 / 2e-72 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.004G235400 [exp] 235 / 4e-72 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.014G029100 [exp] 229 / 1e-69 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 225 / 4e-68 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G140900 [exp] 224 / 6e-68 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G033900 [exp] 222 / 6e-67 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.002G126100 [exp] 221 / 2e-66 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.008G067500 [exp] 219 / 5e-66 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024272 pacid=23175043 polypeptide=Lus10024272 locus=Lus10024272.g ID=Lus10024272.BGIv1.0 annot-version=v1.0 ATGGAAACTACAAACCTCTGTTTTGCTATCTGCGCAATACTTGTTCTTATACCACACCTACTATGGCGAAAACTCAAGATTCGACACCATAATCCCCCGC CAGGCAGTCTTGGGTTTCCCCTCATCGGAGAGACTATACAGTTCATGGCCGCAATCAACAGCAATCGAGGATTCTACGACTTCGTCCGAGTTCGCAGCCT AAGGTACGGGAGTTGCTTCAAGACTAACATATTTGGTTCGACTCACGTTTTTGTATCGACTACTGAATCGGCCAGGACGATCCTGAATAACGAGTCGGGT AAATTCAGTAAGCGGTACATATGTTCGATAGGTGAGCTAGTGGGAGAGAGTAGCGTACTGTGCGCACCTTCTCAACAACACCACAAGCTGATACGGAGCC GCCTCATGAGTTTGGTCTCCCCAACTTCATTGGGGACTTTTATCACACAGTTTGATCAGCAGATTGTCCAAAGCTTGGGGAGTTGGGAGAATGATACCAC CGTAATTCTACTGGACCAGGCCGTCCAGATAACATTGGAGGCTATGTGCAAACTGTTGATGGGGATAGAAGAAGGAGAAGAGATAAAGAGTGTGTATGAG GATGTATCAGACATCTTTAGAGCAATGCTGGCATTTCCTTTGAGGCTTCCTTGGACTAGATTTCATAAAGGCCTTAAGGCCCGTGAAAGAGTTATGAAGA GACTAGATAGAATGATGTCTGAAAGGAGGGAAATCCCAGCAGATGATGAACAAGCTGACTTTCTTCAGCAGCTACTTGGAAGTTCCAACTTAACAGATGG GGAAATTAAGGATAATATACTGACCATGATCATTGCAGGACAAGATACCACTGCAAGTGCCATGACTTGGATGGTCAAGTACCTCGCTGAAAATTCAGAT GTTGCCCATTTATTAAGGGCTGAACAACTTCATATTTTGAAACGAAGATCAGGGAGGGAGTTCTTGGTTGCGGAAGATTTGAATGATATGCCATATGCTA CCAAGGTTATCAAGGAGTCGCTAAGGATGGCTTCTATTGTACCATGGTTCCCTCGACTAGCACGCCAAGATTGTCAGATTGAAGGATACAAGATAAAGAA GGGATGGAACATAAACGTTGACGCAAGATCAATTCACTTGGACCCCAAAGTATACAAGGAACCAACGAAATTCAATCCATCCAGATTTGATGATGAGGGG ATTAGCAGTTGTTTCTTGGGATTTGGAATGGGAGGGAGGACTTGCTTGGGAATCAACTTGGCTAAATCCATGTTACTTGTTTTCCTCCATCGTCTCCTCA CTTCTTACAAGTGGAAACTGGTGGATTCAGATTCAAGCATTGAGAAGTGGGCAATGTTCTCAAGGCTGAAAAACGGCTGCCCCATCCATTTGACGAGGAT TACTACACCTTAA
AA sequence Show only first row Show all	>Lus10024272 pacid=23175043 polypeptide=Lus10024272 locus=Lus10024272.g ID=Lus10024272.BGIv1.0 annot-version=v1.0 METTNLCFAICAILVLIPHLLWRKLKIRHHNPPPGSLGFPLIGETIQFMAAINSNRGFYDFVRVRSLRYGSCFKTNIFGSTHVFVSTTESARTILNNESG KFSKRYICSIGELVGESSVLCAPSQQHHKLIRSRLMSLVSPTSLGTFITQFDQQIVQSLGSWENDTTVILLDQAVQITLEAMCKLLMGIEEGEEIKSVYE DVSDIFRAMLAFPLRLPWTRFHKGLKARERVMKRLDRMMSERREIPADDEQADFLQQLLGSSNLTDGEIKDNILTMIIAGQDTTASAMTWMVKYLAENSD VAHLLRAEQLHILKRRSGREFLVAEDLNDMPYATKVIKESLRMASIVPWFPRLARQDCQIEGYKIKKGWNINVDARSIHLDPKVYKEPTKFNPSRFDDEG ISSCFLGFGMGGRTCLGINLAKSMLLVFLHRLLTSYKWKLVDSDSSIEKWAMFSRLKNGCPIHLTRITTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	0	1
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	1.4	0.9837
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	1.4	0.9863
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10014238 [exp]	1.7	0.9823
AT5G22400			Rho GTPase activating protein ...		Lus10022700 [exp]	2.8	0.9805
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10027761 [exp]	4.2	0.9674
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10028278 [exp]	4.5	0.9615
AT5G22400			Rho GTPase activating protein ...		Lus10014213 [exp]	6.5	0.9672
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	6.9	0.9528
AT5G13250			RING finger protein (.1)		Lus10001802 [exp]	7.6	0.9476
AT5G55950			Nucleotide/sugar transporter f...		Lus10022563 [exp]	7.9	0.9638

Compare expression of checked genes

Lus10024272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.