Plant FIBer expression Database

Lus10024273 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66440 55 / 1e-08 unknown protein
AT1G75360 40 / 0.0007 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G229800
[exp]
74 / 2e-15 AT5G66440 63 / 2e-11 unknown protein
Potri.002G033100
[exp]
72 / 1e-14 AT5G66440 78 / 1e-16 unknown protein
Potri.005G120300
[exp]
46 / 1e-05 AT5G66440 134 / 4e-38 unknown protein
Potri.007G021500
[exp]
42 / 0.0002 AT5G66440 147 / 6e-43 unknown protein
PFAM info
Representative CDS sequence
>Lus10024273 pacid=23175001 polypeptide=Lus10024273 locus=Lus10024273.g ID=Lus10024273.BGIv1.0 annot-version=v1.0
ATGGCTTCCTCCGATTACGCCGACGCGGTCAAGGCGGAGAAAGCCGACGCCATTCGGAATTACAATAGGAAGAGACAGTTCCTCCAAGTCGGCCGCCTAC
TTGGCGCCTCTGCTCTTCTCGTTTGGTCCTTGAAAACTCTGCCGTTTTTTACGCAGAGGGCCACCGCTTACGTCTCTGTTTTCGCACAGCAATTGTTCGC
CTTCGTCCTCGCCAACGCCATCCTCCTCTTCGTCTACTGCTTCTCCTCCGCCGCCTCTGCTGCCGCTAAAGACGCTGATTCATCTCCTCCGTCCTTCCAG
TCGGACCTCTACCAAGAGTATGTCTCATCTCTTTCATCAACTCGACCACAGGAGGATGTTTTCTTGCTGGAGGAGGCTGCAGCTGTGAGTAATGCCACAG
GAGCCGAGGATGATACTACTGTCGATGATGACGCCGTGGTGGTGGTGGTGGAGGCTCCCGTGAGTCGTCGTTACCGGAGGACACGATCGGTGGTGTCTGA
AGCATTGGTGGCCAATTTTATAATCGATGATGATGAAGCTGCTGGTAGTAGCATTGGGAAAAAGGAGCTGAGGCGGTCGGAGACAGTGGTGGAGAAGAGG
AAAACGGCGGTGCTGGAGAGGAGCATGAGTATGAATCAGGCCAGGAAATCAATCGAGGAATTGAATAACGAAGAGTTTAATATGACGGTGGAGAGCTTCA
TAGCCACCAAGAAGAAACTGCTGAGGGATGAAAACATTGCGCTTTCCACCGCCGAAGTCGGAGAGACAGGGGAATGA
AA sequence
>Lus10024273 pacid=23175001 polypeptide=Lus10024273 locus=Lus10024273.g ID=Lus10024273.BGIv1.0 annot-version=v1.0
MASSDYADAVKAEKADAIRNYNRKRQFLQVGRLLGASALLVWSLKTLPFFTQRATAYVSVFAQQLFAFVLANAILLFVYCFSSAASAAAKDADSSPPSFQ
SDLYQEYVSSLSSTRPQEDVFLLEEAAAVSNATGAEDDTTVDDDAVVVVVEAPVSRRYRRTRSVVSEALVANFIIDDDEAAGSSIGKKELRRSETVVEKR
KTAVLERSMSMNQARKSIEELNNEEFNMTVESFIATKKKLLRDENIALSTAEVGETGE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G66440 unknown protein Lus10024273
[exp]
0 1
AT1G76190 SAUR-like auxin-responsive pro... Lus10021825
[exp]
3.7 0.6991
Lus10040168
[exp]
10.0 0.6957
AT2G40610 ATHEXPALPHA1.11... expansin A8 (.1) Lus10029038
[exp]
16.3 0.6899
AT1G59640 bHLH ZCW32, bHLH031... BIG PETAL UB, BIG PETAL P (.1.... Lus10030807
[exp]
18.4 0.6589
AT4G38840 SAUR-like auxin-responsive pro... Lus10008996
[exp]
23.5 0.6830
AT4G38840 SAUR-like auxin-responsive pro... Lus10009627
[exp]
27.6 0.6735
AT1G53700 PK3AT, WAG1 PROTEIN KINASE 3 ARABIDOPSIS T... Lus10005583
[exp]
28.4 0.6762
AT4G38840 SAUR-like auxin-responsive pro... Lus10009624
[exp]
31.1 0.6675
AT5G18430 GDSL-like Lipase/Acylhydrolase... Lus10004774
[exp]
31.2 0.6611
AT2G40610 ATHEXPALPHA1.11... expansin A8 (.1) Lus10034227
[exp]
40.9 0.6665

Lus10024273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.