Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39170 554 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 535 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 475 / 5e-161 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 454 / 1e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 397 / 2e-131 ATSFH12 SEC14-like 12 (.1) AT2G21540 393 / 5e-130 ATSFH3 SEC14-like 3 (.1.2.3) AT4G34580 379 / 2e-124 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 370 / 6e-121 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 351 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G16380 328 / 6e-105 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040431 [exp] 547 / 0 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 543 / 0 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 538 / 0 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 526 / 3e-180 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023547 [exp] 381 / 1e-124 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10026355 [exp] 377 / 8e-124 AT2G21540 583 / 0.0 SEC14-like 3 (.1.2.3) Lus10040432 [exp] 379 / 3e-123 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10041779 [exp] 352 / 3e-114 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025988 [exp] 343 / 1e-109 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119500 [exp] 566 / 0 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 566 / 0 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 563 / 0 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 558 / 0 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G119700 [exp] 411 / 2e-136 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.009G119400 [exp] 410 / 7e-136 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 409 / 2e-135 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.007G020300 [exp] 407 / 3e-135 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.002G243000 [exp] 307 / 2e-95 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G471300 [exp] 282 / 2e-86 AT1G55690 714 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10024276 pacid=23174947 polypeptide=Lus10024276 locus=Lus10024276.g ID=Lus10024276.BGIv1.0 annot-version=v1.0 ATGTCGGGCCCCTTGGAGCGTCTCGCTATACCTTGCTTTGATGGATCTTCAGGGAACGAAGAAAGAAGAGAGAGGAGGTCGGATTGGGATAATTCGGAGG AGGAAAGGATGACTAGGATGGGGAGTTTGAAGAAGAAGGCGATTAAGGCTTCCTCCAAATTTAGGCGTTCTCTCAAGAAGAATAAGAAGAGCAAGAAGAA GACTCTCGGTGACGAACAAGGCACTTCCTCCGCTGCTGCTGCTGCAATTGAGGATGTCTGGAATGCTGAAGAGCTCAAGGTTGTTGAATCCTTCAGACAG GTTCTTGCCGCCGATGATTTGCTTCCTTCCAGGCATGACGATTATCATACCTTGCTCAGTGACTACTTTGTCAGATTCCTCAAGGCAAGGAAGTTTGATT TGGAGAAAGCAAAGCAAATGTGGACCAATATGCTAGAGTGGAGGAAGGAGTTTGGCACTGATACCATCCTTGAGGATTTTGTGTACCCGGAGTTGGACCA AGTATTCGAGTACTATCCACAGGGTTACCATGGGGTTGATAAGGATGGGAGGCCTATCTACATTGAGAGGCTGGGACAAGTTGAACCCAGTAAACTGATG CAAGTAACGAATTTGGATCGATATGTTAGATACCATGTCCAGGAGTTCGAGAAGACTTTGACATTCAAGTTTCCAGCCTGCTCTGTTGCAGCCAGGAGAC GGATTCAATGTAGCACCACCATCTTGGATGTCCAAGGCGTGGGTTTGAAAAATCTAACCAAGCCTGCTAGAGAGCTCATCATGCAGCTGCAAAAGATTGA TGCTGATAACTACCCTGAGACTCTTGGTAGGATGTTTGTTATCAACGCTGGTCCTGGTTTCAAGCTGCTCTGGAGCACAATCAAATCTTTTCTTGATCCT GATACAGTTTCCAAGATTCATATGGTCCTCAACGGGGAGGCATCACGTTCAAGGCAAATGGTAACAGTTTTGGATCGTAACGGCAAGGTGCAACAGTATT CGACGATGAAGACGAGTGATACTTCAGCAGCTGAGTCAGGGTCTGAGGTAGAAGATGTCATCTCACCAAATGTAACTAACAAGTGCTTGCCTCCACGGTT AACACCTGTCTGTGAAGAAGCTAAGGGGGCAGGTAAAGTGAGCTACGCTGGTGGCATATCTGAATATGATGAATATGTTCCAATGGTTGACAAGACAGTA GATTCAGAATACGAGAGACAATTGTCATCGTCGGATCAAGATAACTCAAAAGGTTCCAGAATTATGCTCCTCCTGTTGGATCGAATATTAGTCAGTCAGT CGGTCAGTCAACCATTTAAGTCTGAAAGAAGTATGGTGAATAATGTTGCAGAGATGCAGTCAGGTGGTGGAAGGACAGAGCAAACACCAGGACTCCTTGG TCGAATATGGGGTGTGCTTGTTGCCTTGGTCATAGCTATTGTTACTTTCTTTCATTCACCCACAAATCCATCAACCAACAGTGGTACGACTTACCTGATG TCCGATCCATCGGCGGCCAACTCAGTGGATTCTGCAATGTGGAGACGTCTGAGTGAACTCGAGCAAAAGGTTGACATACTGCAGACCAAACCTCTGGAAA TGCCTTGGGAGAAAGAAGAGCTGTTGAATGCTGCTGTTTGCCGTGTTGATGGCTTAGAAGCCGAGCTAATCTCAACCAAAAAGGCTTTGCATGAAGCTCT AATCAGGCAAGAAGAACTGCTGGCCTACGTGGATAACCTTGAACAAACCAAATTCATGGTAGAAGATTACAGTTTTAAATTACCTGAAACAAAATTATAT CTCATCAACTTGCCGTTCACTAACTCGAAGCGTGGAATTTTGTTTAACGTTTGGACAGAGGAGGAAATTTTGCTTGTTCTGAAGCCCCGCGGTGCAGTGC AGGTTTGGTGA
AA sequence Show only first row Show all	>Lus10024276 pacid=23174947 polypeptide=Lus10024276 locus=Lus10024276.g ID=Lus10024276.BGIv1.0 annot-version=v1.0 MSGPLERLAIPCFDGSSGNEERRERRSDWDNSEEERMTRMGSLKKKAIKASSKFRRSLKKNKKSKKKTLGDEQGTSSAAAAAIEDVWNAEELKVVESFRQ VLAADDLLPSRHDDYHTLLSDYFVRFLKARKFDLEKAKQMWTNMLEWRKEFGTDTILEDFVYPELDQVFEYYPQGYHGVDKDGRPIYIERLGQVEPSKLM QVTNLDRYVRYHVQEFEKTLTFKFPACSVAARRRIQCSTTILDVQGVGLKNLTKPARELIMQLQKIDADNYPETLGRMFVINAGPGFKLLWSTIKSFLDP DTVSKIHMVLNGEASRSRQMVTVLDRNGKVQQYSTMKTSDTSAAESGSEVEDVISPNVTNKCLPPRLTPVCEEAKGAGKVSYAGGISEYDEYVPMVDKTV DSEYERQLSSSDQDNSKGSRIMLLLLDRILVSQSVSQPFKSERSMVNNVAEMQSGGGRTEQTPGLLGRIWGVLVALVIAIVTFFHSPTNPSTNSGTTYLM SDPSAANSVDSAMWRRLSELEQKVDILQTKPLEMPWEKEELLNAAVCRVDGLEAELISTKKALHEALIRQEELLAYVDNLEQTKFMVEDYSFKLPETKLY LINLPFTNSKRGILFNVWTEEEILLVLKPRGAVQVW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10024276 [exp]	0	1
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10036288 [exp]	1.0	0.9345
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10030705 [exp]	4.2	0.8808
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10000268 [exp]	4.5	0.9106
AT3G55140			Pectin lyase-like superfamily ...		Lus10024439 [exp]	5.2	0.8934
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10012602 [exp]	5.5	0.8605
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10010100 [exp]	5.9	0.8753
AT3G53000		ATPP2-A15	phloem protein 2-A15 (.1)		Lus10008642 [exp]	6.6	0.8575
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10013692 [exp]	6.9	0.8721
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10019093 [exp]	7.3	0.8709
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10031634 [exp]	8.5	0.8441

Compare expression of checked genes

Lus10024276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.