Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75380 452 / 4e-161 ATBBD1 bifunctional nuclease in basal defense response 1 (.1.2.3) AT1G19660 450 / 4e-160 Wound-responsive family protein (.1.2) AT5G66050 113 / 2e-29 Wound-responsive family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007390 [exp] 610 / 0 AT1G19660 412 / 3e-144 Wound-responsive family protein (.1.2) Lus10041852 [exp] 114 / 6e-29 AT5G66050 261 / 2e-85 Wound-responsive family protein (.1.2) Lus10028398 [exp] 113 / 9e-29 AT5G66050 261 / 1e-85 Wound-responsive family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G032500 [exp] 531 / 0 AT1G75380 495 / 4e-178 bifunctional nuclease in basal defense response 1 (.1.2.3) Potri.005G230600 [exp] 523 / 0 AT1G75380 463 / 3e-165 bifunctional nuclease in basal defense response 1 (.1.2.3) Potri.005G105900 [exp] 124 / 7e-33 AT5G66050 283 / 7e-94 Wound-responsive family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02577 [flax] [poplar] DUF151 Domain of unknown function (DUF151)
Representative CDS sequence Show only first row Show all	>Lus10024277 pacid=23174937 polypeptide=Lus10024277 locus=Lus10024277.g ID=Lus10024277.BGIv1.0 annot-version=v1.0 ATGGCGTCACTGCAAGGACCGGTTATCTGCCCTGCCGTTCGAGCAAAGCATGGAGGATTCGATATATGCGCTTTCCCAATGATGAACGGCTGTGTGGTGA GAGCCAAGGTGGTGAGGAATGAGTTACTTGGATTCAGAGGAATCCTTGGTTACAACAGTAAGGTGGGTTTGGTCTCACGGAGGCGGAACTTCTCCAAGGT GCATTGTGCTTTGAGTTCTTCATCAAATGATAATGGAAATATGGCTGAGAACTTCAACGATAAGGATGATGATTATGTTAACTCTTCTGTAGTTGAAGCT GTGGAGGTGAAGAGTGGTTCAGAAGGTTTCATGATCAAGATGAGGGATGGAAGACACTTGAGATGTGTCCATAATAATCCTCAAGGAAGCCACCTGCCTG ACTACGCCCCTCATCCTGCAATTGTGTTGAAGATGGAAGATGGGACGGGTCTTCTCCTCCCAATAATTGTTTTGGAGATGCCAAGTGCATTGCTCATGGC AGCAGTCCGCAATGTTCAAATTGCTAGACCCACTATGTATCAAGTGGTGAAGGAAATGATTGACAAGATGGGCTACGAAGTTAAGCTAGTCAGAGTTACT AGGCGAGTGCACGAAGCATATTTCGCCCAATTGTATCTCACAAAGGCGGGTTCTGAGGAGCGCATTAGTTTTGACCTCCGCCCTTCTGATGCTATCAACA TTGCAGTGAGATGCAAGGTACCAATTCAAGTGAACAAGTACCTGGCATACAGTGATGGGATGAGAGTCATTGAATCTGGAAAACTAGCGCAGTCTTTTGC TGCTGATGGATTACTATTCACCGAACTCGATCGGCCCACGGGTCAGCCATGTCTGGATACCAAAGAGTTTGATCTTGTGCGCAACATGTTCCAAGCTGCC ATCGAGGAGCGTTACAATGATGCTGCTGAGTGGAAAGACAAACTGAGTCAGTTTCGGGCCAAGAGGAACTTGAAGAAACAGATATGA
AA sequence Show only first row Show all	>Lus10024277 pacid=23174937 polypeptide=Lus10024277 locus=Lus10024277.g ID=Lus10024277.BGIv1.0 annot-version=v1.0 MASLQGPVICPAVRAKHGGFDICAFPMMNGCVVRAKVVRNELLGFRGILGYNSKVGLVSRRRNFSKVHCALSSSSNDNGNMAENFNDKDDDYVNSSVVEA VEVKSGSEGFMIKMRDGRHLRCVHNNPQGSHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSALLMAAVRNVQIARPTMYQVVKEMIDKMGYEVKLVRVT RRVHEAYFAQLYLTKAGSEERISFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLAQSFAADGLLFTELDRPTGQPCLDTKEFDLVRNMFQAA IEERYNDAAEWKDKLSQFRAKRNLKKQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	0	1
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10024446 [exp]	1.0	0.9067
AT1G01230			ORMDL family protein (.1)		Lus10005980 [exp]	2.2	0.8959
AT1G03250			unknown protein		Lus10012370 [exp]	2.4	0.9000
AT5G01800			saposin B domain-containing pr...		Lus10022750 [exp]	6.0	0.8934
AT1G78070			Transducin/WD40 repeat-like su...		Lus10041102 [exp]	6.9	0.8979
AT1G04555			unknown protein		Lus10023715 [exp]	7.1	0.8985
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032499 [exp]	7.5	0.8655
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10029271 [exp]	8.4	0.8735
AT4G36660			Protein of unknown function (D...		Lus10010810 [exp]	8.5	0.8564
AT1G80940			unknown protein		Lus10041624 [exp]	9.0	0.8541

Compare expression of checked genes

Lus10024277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.