Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27620 537 / 0 HXXXD-type acyl-transferase family protein (.1) AT2G40230 281 / 5e-90 HXXXD-type acyl-transferase family protein (.1) AT5G41040 219 / 3e-66 HXXXD-type acyl-transferase family protein (.1.2) AT1G03390 204 / 4e-60 HXXXD-type acyl-transferase family protein (.1) AT5G63560 200 / 4e-59 HXXXD-type acyl-transferase family protein (.1) AT3G48720 200 / 6e-59 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT3G03480 174 / 5e-49 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G17540 171 / 8e-48 HXXXD-type acyl-transferase family protein (.1) AT5G07080 151 / 2e-40 HXXXD-type acyl-transferase family protein (.1) AT1G28680 150 / 3e-40 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028983 [exp] 260 / 1e-81 AT2G40230 492 / 7e-173 HXXXD-type acyl-transferase family protein (.1) Lus10007509 [exp] 254 / 2e-78 AT2G40230 485 / 4e-169 HXXXD-type acyl-transferase family protein (.1) Lus10012552 [exp] 219 / 3e-66 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 204 / 3e-60 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10033079 [exp] 204 / 6e-60 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10032554 [exp] 203 / 6e-60 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10017744 [exp] 203 / 2e-59 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 199 / 5e-58 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10020331 [exp] 184 / 9e-53 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G032200 [exp] 576 / 0 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.005G230900 [exp] 567 / 0 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G071200 [exp] 286 / 7e-92 AT2G40230 544 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G186300 [exp] 282 / 2e-90 AT2G40230 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G157100 [exp] 215 / 2e-64 AT1G03390 627 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G158400 [exp] 215 / 3e-64 AT1G03390 625 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G326300 [exp] 203 / 5e-60 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 197 / 8e-58 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.013G074400 [exp] 192 / 1e-55 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 192 / 2e-55 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10024278 pacid=23175013 polypeptide=Lus10024278 locus=Lus10024278.g ID=Lus10024278.BGIv1.0 annot-version=v1.0 ATGTTAAACTCCTCCTCCACAACAACAGTAGAGCTCCCAGATTGTCACTACAAAACCAAACCATCCTTAATCAAACCAATCACCCAAACTCCAACCCATT CCCTTTACCTCTCCAACCTCGACGACCAGAAATTCCTCCGGTTCTCCATCAAATACCTCTACGTTTTCCGAAGATCAGTCGAAGGTTTGAGGGAGTCGCT GTCCAGAGTGCTGGTGGATTACTACCCGCTCGCCGGAAGGTTGAGGAAGAAGGATGATGAGGAGAAGCTGGTGGTTGATTGTAACGGGGAAGGTGCTCTG TTCGCCCAAGCCTTCATGGATTTGACGGTTGGCCAGTTTCTGCATATTTCTGGAAAGCCCAATCGGTCATGGAGGAAGCTGCTTTATAGAGTTGAAGGCC AGGGCTTCTTCGACATTCCTCCTCTTGTTGTCCAGGTGACGAAGCTCCGTTGCGGGGGAATAATTCTATGTACGGCCATCAATCACTGCATCTGCGACGG CATCGGCACTTCACAGTTCCTACGAGCCTGGGCCCACGCCACCATCAGCCCAAATCTCTACCTGCCTATAAAGCCCTTCCACTCTCGCCACCTGTTAAAT CCCCGAAACCCGCCCCGATTCAACTCCATACACCCGGGTTACCACCACCACTCCTCCGGCGACCACGACCCGCCGCCGCTGCTACCTGAAATGGACGTAC ACCGCTACCTGCTCTCTCAGCCGCTCGTCCCGACGACGATAACCTTCTCCGCTGCTGACATCCTCTGCCTCAAACAGCAATGCGTGCCGCCGGTGAAGTG CACGGCGTTCGAGGCACTCGCGTCCCACACGTGGCGCTCATGGGTCCGGTCCCTTGACCTGTCTCCGTCATCAGTTAACACAAAGCTACTGTTCTCCGTC AACATACGAAAGAAGGTGGCCCCGGAATTGCCCGCTGGGTACTACGGGAACGGGTTCATCTTGGGATGTGCGCAGACGACGGTTAAGGATCTGAAGGCGG ATGGGAAGAACTTATACGACGCCGTAAAGCTGGTAAAGCAGGCCAAGTCAAGCATAACGGGGGAATACGTGAGGTCTTTGATTGACTTGATGGAGGACAA AAGGGTGAAAACGGATTTGAGAGAGGCCACCTTGGTAATTTCGCAATGGGCGAAATTGGGATTGGAAGATTTGGCATTTGGAGGAGGAGAAGAAGACAAG GGGGTGTACATGGGATCGGTGACGAGCGATATCTACTGTTTGTTTCTGCCGGTGGTGGGAGATACTGAAGCGGTGAGAGTGTTGGTGTCGATGCCGGAGA CTGCGGCGGACAAATTCGAGTTTTATATGAAGGAATATTTTTGGCACAAGGGGACAGATTACAGTGGTGGGGATCATAAAGATAATGGTGCTACTAATGG GTTTCATCAGGTTAATGATAAGGGAGTTGACCACTGA
AA sequence Show only first row Show all	>Lus10024278 pacid=23175013 polypeptide=Lus10024278 locus=Lus10024278.g ID=Lus10024278.BGIv1.0 annot-version=v1.0 MLNSSSTTTVELPDCHYKTKPSLIKPITQTPTHSLYLSNLDDQKFLRFSIKYLYVFRRSVEGLRESLSRVLVDYYPLAGRLRKKDDEEKLVVDCNGEGAL FAQAFMDLTVGQFLHISGKPNRSWRKLLYRVEGQGFFDIPPLVVQVTKLRCGGIILCTAINHCICDGIGTSQFLRAWAHATISPNLYLPIKPFHSRHLLN PRNPPRFNSIHPGYHHHSSGDHDPPPLLPEMDVHRYLLSQPLVPTTITFSAADILCLKQQCVPPVKCTAFEALASHTWRSWVRSLDLSPSSVNTKLLFSV NIRKKVAPELPAGYYGNGFILGCAQTTVKDLKADGKNLYDAVKLVKQAKSSITGEYVRSLIDLMEDKRVKTDLREATLVISQWAKLGLEDLAFGGGEEDK GVYMGSVTSDIYCLFLPVVGDTEAVRVLVSMPETAADKFEFYMKEYFWHKGTDYSGGDHKDNGATNGFHQVNDKGVDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27620			HXXXD-type acyl-transferase fa...		Lus10024278 [exp]	0	1
AT4G22758			unknown protein		Lus10006995 [exp]	11.8	0.8671
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	12.2	0.8004
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10034138 [exp]	20.9	0.8000
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10020389 [exp]	21.8	0.7832
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10036108 [exp]	25.5	0.7130
AT1G21240		WAK3	wall associated kinase 3 (.1)		Lus10013387 [exp]	36.1	0.7812
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10036109 [exp]	38.2	0.7174
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10043341 [exp]	41.0	0.7267
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	43.3	0.7673
					Lus10003616 [exp]	45.2	0.7548

Compare expression of checked genes

Lus10024278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.