Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75390 151 / 4e-47 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT4G34590 136 / 2e-41 bZIP ATB2, ATBZIP11, BZIP11, GBF6 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) AT2G18160 121 / 2e-35 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT3G62420 100 / 3e-27 bZIP ATBZIP53 basic region/leucine zipper motif 53 (.1) AT5G15830 73 / 2e-16 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT2G04038 70 / 2e-15 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT3G30530 70 / 2e-15 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT1G13600 70 / 3e-15 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT5G38800 63 / 6e-13 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT4G37730 64 / 1e-12 bZIP ATBZIP7 basic leucine-zipper 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001347 [exp] 267 / 4e-93 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2) Lus10040428 [exp] 135 / 1e-40 AT1G75390 148 / 8e-46 basic leucine-zipper 44 (.1.2) Lus10028333 [exp] 131 / 3e-39 AT1G75390 134 / 5e-40 basic leucine-zipper 44 (.1.2) Lus10041780 [exp] 130 / 8e-39 AT1G75390 135 / 2e-40 basic leucine-zipper 44 (.1.2) Lus10010005 [exp] 105 / 4e-29 AT3G62420 164 / 1e-52 basic region/leucine zipper motif 53 (.1) Lus10025024 [exp] 103 / 2e-28 AT3G62420 161 / 9e-52 basic region/leucine zipper motif 53 (.1) Lus10011722 [exp] 72 / 5e-16 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10011557 [exp] 69 / 1e-15 AT3G49760 87 / 9e-23 basic leucine-zipper 5 (.1) Lus10029101 [exp] 69 / 1e-14 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G231300 [exp] 182 / 8e-60 AT1G75390 172 / 2e-55 basic leucine-zipper 44 (.1.2) Potri.002G031900 [exp] 172 / 1e-55 AT1G75390 128 / 3e-38 basic leucine-zipper 44 (.1.2) Potri.009G119700 [exp] 167 / 1e-53 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.004G158200 [exp] 162 / 1e-51 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.005G119300 [exp] 137 / 1e-41 AT2G18160 130 / 3e-39 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) Potri.007G019900 [exp] 136 / 3e-41 AT1G75390 130 / 5e-39 basic leucine-zipper 44 (.1.2) Potri.002G196200 [exp] 109 / 4e-31 AT3G62420 182 / 3e-60 basic region/leucine zipper motif 53 (.1) Potri.014G120800 [exp] 102 / 2e-28 AT3G62420 161 / 8e-52 basic region/leucine zipper motif 53 (.1) Potri.007G006900 [exp] 81 / 5e-19 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.014G007100 [exp] 75 / 4e-17 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10024279 pacid=23174960 polypeptide=Lus10024279 locus=Lus10024279.g ID=Lus10024279.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCCAGTGGGAATTCATCCTCCCCAGGCGGATCTTCCTCCGTGCTCCTGAACTCAGGCTCCGACGAGGACCTTCAGCAACTGGTGATGGACG AGAGGAAGCGAAAGAGAATGCAATCGAACCGGGAGTCGGCGAGGCGGTCGAGGATGAGGAAGCAGAAGCATCTGGACGATCTGGTGGTTCAGGTGAGCCA GCTCAGGAAAGAAAACAGCCAGATCCTCGCTGCCGTCAACGTTACCACACAGCACTTTTTGAACGTCGAGGCCGACAACTCAGTCCTCCGAGCTCAGATT GTCGAGCTCACCCACCGCCTCGATTCGCTCACTGAGATCCTCGATTTCATGGGGAACGGACCCTGCAGCTGGGAAACGGATCAGGTGGTGGTGGATTGTA TCCAGCCGGCGGAGAGCTTTCTCAACAACCCTTTGAATTCTATTTACCTCAACCAGCCCATCATGGCCTCGCCCGATTTGTTTCAGTACTGA
AA sequence Show only first row Show all	>Lus10024279 pacid=23174960 polypeptide=Lus10024279 locus=Lus10024279.g ID=Lus10024279.BGIv1.0 annot-version=v1.0 MASSSGNSSSPGGSSSVLLNSGSDEDLQQLVMDERKRKRMQSNRESARRSRMRKQKHLDDLVVQVSQLRKENSQILAAVNVTTQHFLNVEADNSVLRAQI VELTHRLDSLTEILDFMGNGPCSWETDQVVVDCIQPAESFLNNPLNSIYLNQPIMASPDLFQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10024279 [exp]	0	1
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10021887 [exp]	4.2	0.8378
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10004428 [exp]	4.2	0.8443
AT5G22930			Protein of unknown function (D...		Lus10016148 [exp]	4.7	0.7754
AT4G11350			Protein of unknown function (D...		Lus10007923 [exp]	7.3	0.7985
AT1G61670			Lung seven transmembrane recep...		Lus10025135 [exp]	7.7	0.7233
AT5G10550		GTE2	global transcription factor gr...		Lus10020471 [exp]	10.2	0.7879
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10035811 [exp]	11.8	0.8029
AT4G18650			transcription factor-related (...		Lus10029229 [exp]	16.0	0.7697
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	21.4	0.8173
					Lus10002550 [exp]	23.0	0.7523

Compare expression of checked genes

Lus10024279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.