Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19690 287 / 2e-95 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003838 [exp] 184 / 2e-57 AT1G19690 96 / 6e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G031500 [exp] 360 / 9e-124 AT1G19690 385 / 3e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10024280 pacid=23174918 polypeptide=Lus10024280 locus=Lus10024280.g ID=Lus10024280.BGIv1.0 annot-version=v1.0 ATGGATATTTGTCGACTACAAGCTCGGGTTCTCCCTGGATCAAGCCATGTCTCTTTCCGAAATCGACCGTTTCCTGCTGCAATGGCTTCACCGTCACCTT TGCAGTCTGTCAATTTGGCTGAGAGTCGGATGTTCATGCTGGGAATGGGATACGTTGGCCAGTTCTTCGGCCAACAACTCCGGCAACAAGGCTGGGTTGT GAAGGGGACTTGCACGACCACGGGGAAGAAGAAGGAACTCGAGGAAAAGGGATTTGATGTTTTTCTGTTCGATGCTAACGAGCCTGACCTGAACGTTCTG CATTCTCTAAGAAGCTGTACTCATCTCCTTGTCTCCATCCCTCCATCAGTTGGTCTTGGAGATCCGTTGCTAAAGCATCAACAACTTCTAAGAGGTGCCT TGACAGACGGGAGCCTTCAGTGGCTGTGTTATTTTTCCTCTACTGGAGTATATGGTGATTGTTCGGGAGCTTTGGTCGATGAAGACTACCCAACAAACCC TTCAACCGAGGTTGCTAAGGCAAGGTTGCTTGCTGAGAACGAATGGTTAGAGTTTGGCCCTTCACTGGGATTATCAACACAAGTGTTTCGACTTGGAGGG ATCTATGGCCCTGGTAGAAGTGCCGTTGACACAGTAATTAAACAGCAACCTTTATCAAAACGTCAGCAAATGAGAGCATCGGGGCAGTATACATCCAGAG TTCACGTTGAGGACATCTGTCAGGCTCTCTGGGCTAGCATCAAGATTCCATCTTTCAGGAGAATGTACAATATCGTGGATGATGACCCGGCTCCTCGAAA GAAGGTGTTTGGATATGCAGAGGAGCTAGTTAAGCAAAAATGGCCTGATTTGATCAAACAAGGATCACCTTCACTGGAAGACATGTCAGGTGGTGTCCTG GGTGAGAATAGTTCAAGAGGGGATAAAAGGGTATCTAATACGCGCATTAAGAGAGAACTAGGCGTGAAGCTTTATCACCCAAGCTACAGATCTGGACTAG TAAGCATCACTGAGCAGCTCAGCCTGTAG
AA sequence Show only first row Show all	>Lus10024280 pacid=23174918 polypeptide=Lus10024280 locus=Lus10024280.g ID=Lus10024280.BGIv1.0 annot-version=v1.0 MDICRLQARVLPGSSHVSFRNRPFPAAMASPSPLQSVNLAESRMFMLGMGYVGQFFGQQLRQQGWVVKGTCTTTGKKKELEEKGFDVFLFDANEPDLNVL HSLRSCTHLLVSIPPSVGLGDPLLKHQQLLRGALTDGSLQWLCYFSSTGVYGDCSGALVDEDYPTNPSTEVAKARLLAENEWLEFGPSLGLSTQVFRLGG IYGPGRSAVDTVIKQQPLSKRQQMRASGQYTSRVHVEDICQALWASIKIPSFRRMYNIVDDDPAPRKKVFGYAEELVKQKWPDLIKQGSPSLEDMSGGVL GENSSRGDKRVSNTRIKRELGVKLYHPSYRSGLVSITEQLSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10024280 [exp]	0	1
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	4.2	0.8250
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10011165 [exp]	5.8	0.8180
AT3G45900			Ribonuclease P protein subunit...		Lus10033275 [exp]	6.5	0.8001
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Lus10015420 [exp]	8.9	0.7922
AT3G08880			unknown protein		Lus10022668 [exp]	9.2	0.7846
AT5G58490			NAD(P)-binding Rossmann-fold s...		Lus10026385 [exp]	12.0	0.7650
AT2G45320			unknown protein		Lus10030280 [exp]	14.8	0.7919
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10037233 [exp]	16.0	0.7424
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	16.9	0.7857
AT5G63010			Transducin/WD40 repeat-like su...		Lus10039042 [exp]	18.7	0.8127

Compare expression of checked genes

Lus10024280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.