Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75420 663 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G19710 649 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G52420 156 / 2e-41 UDP-Glycosyltransferase superfamily protein (.1) AT3G15940 110 / 2e-25 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G78800 50 / 2e-06 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041786 [exp] 644 / 0 AT1G75420 647 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10028338 [exp] 634 / 0 AT1G75420 642 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10011469 [exp] 155 / 5e-41 AT1G52420 765 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10037523 [exp] 149 / 2e-38 AT1G52420 770 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10037008 [exp] 53 / 4e-07 AT1G78800 665 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10015797 [exp] 50 / 3e-06 AT1G78800 652 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G031300 [exp] 693 / 0 AT1G75420 644 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.005G118800 [exp] 671 / 0 AT1G75420 654 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G179000 [exp] 110 / 1e-25 AT3G15940 794 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.016G112600 [exp] 42 / 0.0006 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10024281 pacid=23175003 polypeptide=Lus10024281 locus=Lus10024281.g ID=Lus10024281.BGIv1.0 annot-version=v1.0 ATGGGGAAACATTCGACCGCGTTGATTGCAATGCAGAAGAAGAAATGGCCGTTAATGATTCTGGCGCTGATCACAATGTCGACGGTGATGGTTTTCTTCT TGAGATCCACTTTCGATTCCTGTCACTCCTCTACTTCCGTCAACCACTTCGGAGGAGAGTCCACCGAAGACTCGAGATCCAAGATTCAGTCCACTACGAT GCCGAATCCTCTCGATTTTATGAAGTCTAAGCTCGTTCTCCTCGTTTCCCACGAGCTTTCTCTTTCCGGAGGGCCTTTGTTGTTAATGGAGCTGGCCTTC TTGCTAAGGGGAGTTGGAGCGGAAGTTGTTTGGATAACTTACCAGAAGCCCGCCGAAACTGACGACGTTATCTTCAGTTTGGAACACAAAATGATGGTTC GAGGAGTCCAGGTGTATTCTGCTAGAGGTCAGAAAGCCATAGACACGGCTCTTAAAGCAGACTTGGTTGTTCTAAATACTGCAGTCGCTGGGAAGTGGCT TGATACTGTGATGAAGGATCATCTGCAACAAGTTCTTCCCAAGGTTCTGTGGTGGATACATGAGATGCGAGGGCATTATTTCAAGCTAGAATACGTCAAG CACCTCCCTTTTGTTGCAGGTGCCATGATTGATTCACATACAACGGCAGAGTATTGGAAGAACAGGACTAGTGCACGATTAGGGATTGAAATGCCCGAAA CCTATGTAGTTCACCTTGGGAACAGCAAGGATTTAATGGAAGTGGCTGAGGACAGTGTTGCGAAAAGGGTTCTTCGTGAACATGTTAGGCAAACACTTGG AGTCCGGGATGATGATTTACTTTTTGCTATCATCAACAGTGTTTCACGTGGTAAAGGTCAAGACTTGTTCCTTCGTGGATTCTATGAGAGTCTGCAGAAA ATCCAAGAGAAGAAACTACAAGTTCCGTCTGTACATGCAGTTGTCGTAGGAAGTGACATGAGTGCTCAGACAAAGTTCGAAACTGAACTAAGAACTTTTG TGAAAGACATGAAGATCCAGGATCGTGTTCACTTTGTAAATAAGACCCTAACAGTTGCTCCATACCTGGCATCTATTGATGTTCTAGTTCAGAACTCTCA GGCTCGTGGGGAGTGTTTTGGGAGGATAACCATTGAAGCAATGGCGTTTCAGCTTCCGGTTTTGGGAACTGCAGCAGGAGGTACGATGGAGATAGTAGTT AATGGTACAACTGGAATGCTGCATCCTGCAGGGAAAGGAGGTTTGAGTCCGCTGGCAGACAACATCGTGAAACTGGCGACACACGTCGAAAGGAGGTTGA CGATGGGGAAGAAAGGATATGAGAGGGTGAAGGATAGGTTCTTGGAACACCATATGTCACATAGAATCGCGGTAGTCCTCAAGGATGTCTTACGGAAGGC CAAGTCGTAA
AA sequence Show only first row Show all	>Lus10024281 pacid=23175003 polypeptide=Lus10024281 locus=Lus10024281.g ID=Lus10024281.BGIv1.0 annot-version=v1.0 MGKHSTALIAMQKKKWPLMILALITMSTVMVFFLRSTFDSCHSSTSVNHFGGESTEDSRSKIQSTTMPNPLDFMKSKLVLLVSHELSLSGGPLLLMELAF LLRGVGAEVVWITYQKPAETDDVIFSLEHKMMVRGVQVYSARGQKAIDTALKADLVVLNTAVAGKWLDTVMKDHLQQVLPKVLWWIHEMRGHYFKLEYVK HLPFVAGAMIDSHTTAEYWKNRTSARLGIEMPETYVVHLGNSKDLMEVAEDSVAKRVLREHVRQTLGVRDDDLLFAIINSVSRGKGQDLFLRGFYESLQK IQEKKLQVPSVHAVVVGSDMSAQTKFETELRTFVKDMKIQDRVHFVNKTLTVAPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVV NGTTGMLHPAGKGGLSPLADNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSHRIAVVLKDVLRKAKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	0	1
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10035615 [exp]	1.0	0.8173
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10014727 [exp]	3.9	0.8034
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10016265 [exp]	4.2	0.8069
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	5.5	0.7571
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10004426 [exp]	6.0	0.7473
AT3G17430			Nucleotide-sugar transporter f...		Lus10018339 [exp]	6.0	0.7617
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10024408 [exp]	7.7	0.7798
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	10.9	0.7723
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10014181 [exp]	11.4	0.7066
AT3G18050			unknown protein		Lus10038961 [exp]	13.0	0.7629

Compare expression of checked genes

Lus10024281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.