Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58250 1014 / 0 SAB SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) AT5G49680 880 / 0 KIP KINKY POLLEN, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002604 [exp] 1247 / 0 AT1G58250 2636 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) Lus10032833 [exp] 1238 / 0 AT1G58250 2629 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) Lus10003839 [exp] 633 / 0 AT1G58250 333 / 3e-103 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110700 [exp] 1106 / 0 AT1G58250 3390 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10351 [flax] [poplar] Apt1 Golgi-body localisation protein domain
Representative CDS sequence Show only first row Show all	>Lus10024282 pacid=23174921 polypeptide=Lus10024282 locus=Lus10024282.g ID=Lus10024282.BGIv1.0 annot-version=v1.0 ATGGTGCTTCAAGATGAAGCATCTCCTCCACAAAAGCCACAATCAGCAGAATTGAAAGCAATCATGTGGACGTGTACAGTCTCAGCCCCTGACATGACTC TTGTTCTGTACAGTGTCAATGATTTGCCTCTGTATCATGGGTGCACACAATCATCTCATGTTTTTGCAAATAACATATCGAACATGGGAACAACAGTGCA CATGGAACTTGGCGAACTCAACCTGCACATGGCAGATGAATACCAAGAATGCTTGAAAGAGAGCCCATTCATTGTCGAATCAAATTCAGGTGCATTATTG CATGTACCAAAGGTCATTCTAGACTGGGGAAAAAAGGATACTGAACAATCAGAAGAAAATGGTGGTAAATGTAAATTAGTTCTTTCCGTTGATGTTACTG GCATGGCTATTCATTTGAACTTCAAGCGTTTAGAATCACTTGTTGTTACTGCTGTCTCCTTTCAAGCTCTTGCCAAAAGTCTGTCCCCTGGTAAAAAGAT AACACAAACCCGAGGGGGAAGGCCCTCTAAGTCCCCTGATAAAGGGACGCAAATTTTGAAATTCAATCTTGAAAGGTGTTCTGTCAATATCTCCGGTAAC TCAGACTTGGACAATACAGTTGTTGCTGATCCCAAGCGTGTCAATTATGGATCACAAGGTGGGAGAATAATAGTTACTAACTCAGCTGATGGCACTCCTC GGACAGCAGAAGTGATTTCTACAGTTCTTGGTGACCACAAGAAGGTTGGTTACTTCATATCCCTTGACATCATCAACTTCAGTCTGTGTGTAAACAAGGG GAAGCAATCTACTGAGTTGGAAATTGAAAGAGCCAGGTCAATATATGAAGAATACTTGGCAGAGCACAAGATTGATGCAAAAGTTACATTGTTTGATATA CAGAAATCTAAATATGTGCGACGAGCTGGTGGTCTCAAAGGAGTGGCTGCCTGTTCTCTTTTTAGTGCCTTGGATATTACCATTGGTTGGGAGCCTGATC TACATATTTCACTAGGTGAACTTATGTTGCAGCTGAAGGCAGTGGCACACAACGAGAAGGTTAAGGTATGTGAACACATGGAAGATTCCTCTAGCTTGAA AGACGTTGAACGCGGGAAAGAAACCTCAATGGAATCGGAAAATATTGATAAACATAAGAAAAAGGAATCTATGTTTGCTGTTGATGTGGAAATGTTGACT CTATCTGCTGTAGTTGGAGATGGAGTTGAGGTAATGGTGCAGGTTCACTCAATTTTCTCTGAGAATGCTCAGATAGGAGTACTTCTTGAAGGATTTCTTG TCAGATTCAATGGGATCAGAGTTGTGAAAAGCAGTAGAATGCAAATTTCCCGTGTTCCTAGTGCTTCCACTGGATCATTAAATGCAAAAGCATCATCCCT CCTCACATGGGATTGGGTTGTTCAAGGCCTCAATATACATATAAGTCTGCCATATAGGTTGGAATTGCGTGCCATCGATGATTCTGTTGAGGAAATGTTG CGTGCTTTGAAGCTTGTCACAGCTGCTAAAAAACAAGTTATATTTCCCATCAAGGAAGCGACCCCAAAGATAACAAAGCCCAGTTCAACAATCGGATGTG TCAAGTTTTATATACGTAAACTCACTGGTGATATTGAGGAGGAACCAATGCAGGGTTGGCTTGATGAACATTATCATCTGATGAAGGACAGGGCATCTGA GTTGGCTGTTAGGTTAAATATTCTTGATGAGTGCATCTCTAGGGCTACGAATTGCTCCAAGTCTTCGGAAGGAAATGATTCTACTAGTGAAAAAAAGTTC ATTTATAATGGAGTTGAGATTGATATGCAAGATGCCTCAACTATTAAGAAACTGCAAGATGAGATTTATCTGCAGTCATTTAGAAAATATTATGATGCAT GCCAGAAGTTGATTCCTTCGGAAGGTTCAGGTGCTTGTAAAGGAGGGTTTCAAGCAGGTTTCAAGCCAAGCACAGCAAGGGCTTCTCTGTTTTCGATTTC TGCTACGGACTTAGATCTAACCTTGACAAAGATCGAAGGTGGGAATGATGGGATGATGGAGGTTGTTAAGAAGCTTGATCCTGTTGCTCTTGAAAACAAT ATACCATTTTCTCGACTATATGGGAGCAATATTATCTTACGATCGGCCTCACTCATTGTTCAGTTAAGAGATTACACGTTTCCTCTTCTAGGTGCTACAT CTGGTAAATGCCAAGGCCGTCTGGTACTTGCCCAGCAGGGCAGATTTCTACTTGCTGCTGTTAGTGGTCGTGTTTTAGCTCGGTCATTTCATTCTGTCCT CCAAGTTGGACATGAGATTATTGAACAAGCATTGGGAACTGGAGACGTCCAACTTCCTGAAACTATACCTGAGATGACATGGAAGCGCATGGAATTGTCA GTGATGTTAGAACATGTACAGGCTCATGTTGCACCTACCGATGTTGATCCAGGGGCTGGACTGCAGTGGCTTCCAAAGATCCGTAGAAGTTCCCCAAAAG TAAAGCGTACTGGTGCTCTACTAGAGAGAGTTTTTATGCCTTGCGATATGTATTTTAGATATACAAGACACAAAGGAGGGACGCCAGAGTTGAAGGTCAA ACCATTGAAAGAGCTTACATTCAATACTCACAACATAACAGCAACCATGACATCTCGCCAATTTCAAGTCATGCTGGATGTCTTGACAAATCTCCTCTTT GCTCGACTTCCAAAGCCTAAAAAGAATAGCCTGTCACCTCCAACTGAAGATGAAGAAGACATGGAAGAGGAGGCAGATGAGGTGGTTCCTGATGGTGTTG AAGAGGTTGAACTTGCACGAATTGACCTACAAAAAGCTGAGCAGGAGCTGAGACTGATTTTCAGTGATATCAGGTCACTTTCTCTAGACTGTGGCACATC TGGAGATTCATCTACTAGAGTGGAAGATGACTTGTGGATGATCACTGGTGAAAGATCTGCTCTGATCAGAGGGCTAAAGAGAGAGGCTATTAATGCAAAA AAGTCCAGGAAAGAAGCATCTTCAATGTTAAGAGTGGCTCTACAGAAAGCTGCACAGTTGCGGTTAATGGAGAAGGAGAAGAACAAAAGCCCATCCTATG CTATGCGGATATCGTTGCAGATAAATAAAGTAGTGTGGAGCATGCTTATAGATGGTAAACCATTTGCAGAGGCTGAGATAAATGATATGATTTTTGATTT TGATCGTGATTACAAGGATGTTGGTGTTGCTCTATTTACAACCAAGGTTGTTGTTGTGAGGAATTGTCTCCCTAATACCAAATCAGATATGGTTTTGTCG CCATGGAACCCTCCACCAGATTGGGGAAAAAAAGTTATGCTGCGGGTGGATGCCAAGCAAGGCACACCCAAGGATGGGAATTCTCGTATTGAACTTTTCA TGGTGGAGATTTATCCACTTAAAATTCATTTGACAGAGACTATGTACAGAATGATGTGGACATATTTCTTTCCTGAAGAAGAACAAGATTCACAACGTCG GCAGGAAGTTTGGAAAGTTTCAACCACAGCTGCTGCAAAACGTCTTAAAAAGGGCGTGTTAAGCAGTGAAGCTCCTTCATCTTCCGGCCATGGAGGGAGG GAGCCTGATCTTGTATCCAAGTTGTCTGGAAATAATGGCAATGTACTGAGAAGGACTTCTTCCTTTGACCGAACATGGGAGGAAACTGTTGCTGAAACTG TTGCAAATGAACTTTTACAATCTCATTCGTCCAACCCTTGTTCTTCTTCAAAGGGTGAGCCCCTTGCCATTGAAGCAGTAGATGATAAAAATAAGTCAAA AGATCCCAAGACTATAAAGTCTGGTCGGCCATCTCAAGAAGAGAAGAAGGTGATTAAGACCCAAGATGAAAAAAGATCTCGTCCACGTAAAGTGATGGAA TTCCAGAATATCAAGATCAGTCAGGTTCAACTACAAATTACCTATGAAAGTTCAAGATTTAATCTGCATGAGCTCAAGCTTCTGATGGATACATTTCACC GTGTGGAGTTCACTGGAACATGGAGGAGGTTGTTCTCTCGAGTTAAGAAGCATGTAGTCTGGGGAACTCTGAAATCTGTGACAGGAATGCAGGGCAAGAA ATTCAACAAGGGACATGGCCAGAAAGAGCCAATTGTTCCTCCTGGGGTCCCTGACAGTGACCTTAACCTAAGTGATAATGAAGGTCAGGCAGGGAATCTG GATCAGTACCCAAACTTTCTGAAGCGTCCAAGTGATGGAGCAGCAGCAGGTGATGGGTTTGTAACTTCAGTAAGGGGTCTTTTCAACAACCAACGCCGAA AGGCAAAGGCATTTGTGCTGCGGACAATGAGGGGTGATGAGAATGGATTTCAGGGTGACTGGAGTGATAGTGATGCTGAATTCTCCCCCTTTGCTCGACA GCTCACTATAACCAAAGCAAAGAAACTTATCAGGAGGCACACTAAGAAATTCAGGTCCAAGAAAGGTACAGGACAACAGCAAGACACGATTCCATCATCT CCGAGAGAAACTCCATTCGAGATTGAGAGTGATGCCTCTACCGGGTCTTCACCTTCATTTGAGGACTTCCCAGAAGGGTTCCAAGTCCAGTAG
AA sequence Show only first row Show all	>Lus10024282 pacid=23174921 polypeptide=Lus10024282 locus=Lus10024282.g ID=Lus10024282.BGIv1.0 annot-version=v1.0 MVLQDEASPPQKPQSAELKAIMWTCTVSAPDMTLVLYSVNDLPLYHGCTQSSHVFANNISNMGTTVHMELGELNLHMADEYQECLKESPFIVESNSGALL HVPKVILDWGKKDTEQSEENGGKCKLVLSVDVTGMAIHLNFKRLESLVVTAVSFQALAKSLSPGKKITQTRGGRPSKSPDKGTQILKFNLERCSVNISGN SDLDNTVVADPKRVNYGSQGGRIIVTNSADGTPRTAEVISTVLGDHKKVGYFISLDIINFSLCVNKGKQSTELEIERARSIYEEYLAEHKIDAKVTLFDI QKSKYVRRAGGLKGVAACSLFSALDITIGWEPDLHISLGELMLQLKAVAHNEKVKVCEHMEDSSSLKDVERGKETSMESENIDKHKKKESMFAVDVEMLT LSAVVGDGVEVMVQVHSIFSENAQIGVLLEGFLVRFNGIRVVKSSRMQISRVPSASTGSLNAKASSLLTWDWVVQGLNIHISLPYRLELRAIDDSVEEML RALKLVTAAKKQVIFPIKEATPKITKPSSTIGCVKFYIRKLTGDIEEEPMQGWLDEHYHLMKDRASELAVRLNILDECISRATNCSKSSEGNDSTSEKKF IYNGVEIDMQDASTIKKLQDEIYLQSFRKYYDACQKLIPSEGSGACKGGFQAGFKPSTARASLFSISATDLDLTLTKIEGGNDGMMEVVKKLDPVALENN IPFSRLYGSNIILRSASLIVQLRDYTFPLLGATSGKCQGRLVLAQQGRFLLAAVSGRVLARSFHSVLQVGHEIIEQALGTGDVQLPETIPEMTWKRMELS VMLEHVQAHVAPTDVDPGAGLQWLPKIRRSSPKVKRTGALLERVFMPCDMYFRYTRHKGGTPELKVKPLKELTFNTHNITATMTSRQFQVMLDVLTNLLF ARLPKPKKNSLSPPTEDEEDMEEEADEVVPDGVEEVELARIDLQKAEQELRLIFSDIRSLSLDCGTSGDSSTRVEDDLWMITGERSALIRGLKREAINAK KSRKEASSMLRVALQKAAQLRLMEKEKNKSPSYAMRISLQINKVVWSMLIDGKPFAEAEINDMIFDFDRDYKDVGVALFTTKVVVVRNCLPNTKSDMVLS PWNPPPDWGKKVMLRVDAKQGTPKDGNSRIELFMVEIYPLKIHLTETMYRMMWTYFFPEEEQDSQRRQEVWKVSTTAAAKRLKKGVLSSEAPSSSGHGGR EPDLVSKLSGNNGNVLRRTSSFDRTWEETVAETVANELLQSHSSNPCSSSKGEPLAIEAVDDKNKSKDPKTIKSGRPSQEEKKVIKTQDEKRSRPRKVME FQNIKISQVQLQITYESSRFNLHELKLLMDTFHRVEFTGTWRRLFSRVKKHVVWGTLKSVTGMQGKKFNKGHGQKEPIVPPGVPDSDLNLSDNEGQAGNL DQYPNFLKRPSDGAAAGDGFVTSVRGLFNNQRRKAKAFVLRTMRGDENGFQGDWSDSDAEFSPFARQLTITKAKKLIRRHTKKFRSKKGTGQQQDTIPSS PRETPFEIESDASTGSSPSFEDFPEGFQVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024282 [exp]	0	1
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10028871 [exp]	1.7	0.9447
AT3G13330		PA200	proteasome activating protein ...		Lus10008354 [exp]	2.8	0.9364
AT1G05960			ARM repeat superfamily protein...		Lus10006583 [exp]	4.4	0.9224
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Lus10015655 [exp]	5.5	0.9353
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10003868 [exp]	8.0	0.9439
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032589 [exp]	10.7	0.9415
AT3G13330		PA200	proteasome activating protein ...		Lus10027111 [exp]	11.6	0.9320
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Lus10011195 [exp]	12.5	0.9120
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032834 [exp]	15.0	0.9357
AT1G50410			SNF2 domain-containing protein...		Lus10013452 [exp]	16.3	0.9121

Compare expression of checked genes

Lus10024282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.