Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58250 306 / 5e-93 SAB SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) AT5G49680 180 / 2e-49 KIP KINKY POLLEN, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002603 [exp] 429 / 7e-149 AT1G58250 367 / 4e-114 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) Lus10032834 [exp] 409 / 1e-140 AT1G58250 345 / 1e-105 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110700 [exp] 395 / 1e-123 AT1G58250 3390 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024283 pacid=23175022 polypeptide=Lus10024283 locus=Lus10024283.g ID=Lus10024283.BGIv1.0 annot-version=v1.0 ATGCTACATGTATCAGTGATGGCTTCTGATGCATTGTGGAAAAGAAGAGGTATTTCCACAGAGCTTGTGATTGATATCACGACTTTTGGCTATTTTCAGG GTCCCCTTGAATCTGTATCAGTTGGTGAGATAAGAGTCAGCTTACGCCAGTCATTGGTAAAACTCGGTGTTGGTTTCATATCCAAGGATCCAAAGTTGCA AGTGTTAATATGTGATCTGGAAATTGTTTTGAGGCCATCTGGCAAGGGAAGCAATAAGAAAACTAGTACTCGAAGTGGAAGATCACGGAAAAGTCCTGGA AGAGGAAAGTGGATGGTCTTAGCTAATGTAGCAAAGTTTCTGTCAGTCTCTGTGACTGATTTGGTTGTGAAGACACTCCAAGCTACAGTTGAAGTTAAAG ACCTCCGATTGGATATATCTAAAGATGGTGGTTCTACCCCAAAGCTGTTCATAAAGCTACATTTATTACCTATCTGTGTCCACATGGGCGAACCACGGTT GAGTTGTGACCTACCAACAAACTCTAATAGTAGAGATTGTACTTCGGGGGAATCATTTGGCTCAACTGAGAAGGCTTTGGTTCCATTTTTCTGTGATGAG TTTCTCCTATCTGTGGAATTTGGTCATGATAGGGGAAAGGGTATAATCATCCAGAACCTGGACATATGTAGTGGAGAAGTTAGTGTGAACCTGAATGAGG AGCTGCTCTCAAAAAAGAAGAGTATGTCGGATGCAAATGTTGGCAAAGATAGACAGTTACTTGTTGATTCTGCAGTGATCAAGGATCCACATGAAAAGAA CTCTGCAGTGGTGGCGATGTCTAAGCTCACTTCCATGATTCCCGAAAAGATTAGCTTCACACTCCCGAAACTGGATGTAAGGTTTCTGCATCAAGTGCAC AATCTTCTTGTTGAGAATAACATAATGGGCTTCCAATTCAAAGTTGTGAAATCACCATCTAGTGAGGATGTGGATAGCACGCGCCTTGACATGCAGATGG ATTTCTCTGAGCTGCATCTGCTTAGAGAGACTGGCCGTTCTGTGGTGGAAATATTGAAAGTTGATCTTGTTACCTTCAGTAGTGGTACACTCAATCATCT CACTGAGGATTTGCTTGAGCTGCTTTTTGCTAAGAAGACCTCTCTCGGGCTGTGTCATAACACTATTGACACAGGGTTGGGAGCACCCTTCTCTAGATCC CTGGTTCTACAAGTGAGGATAGAGCTTATAGCATTGATCCCACTTTGTGCCACGATAATCACACTTTAA
AA sequence Show only first row Show all	>Lus10024283 pacid=23175022 polypeptide=Lus10024283 locus=Lus10024283.g ID=Lus10024283.BGIv1.0 annot-version=v1.0 MLHVSVMASDALWKRRGISTELVIDITTFGYFQGPLESVSVGEIRVSLRQSLVKLGVGFISKDPKLQVLICDLEIVLRPSGKGSNKKTSTRSGRSRKSPG RGKWMVLANVAKFLSVSVTDLVVKTLQATVEVKDLRLDISKDGGSTPKLFIKLHLLPICVHMGEPRLSCDLPTNSNSRDCTSGESFGSTEKALVPFFCDE FLLSVEFGHDRGKGIIIQNLDICSGEVSVNLNEELLSKKKSMSDANVGKDRQLLVDSAVIKDPHEKNSAVVAMSKLTSMIPEKISFTLPKLDVRFLHQVH NLLVENNIMGFQFKVVKSPSSEDVDSTRLDMQMDFSELHLLRETGRSVVEILKVDLVTFSSGTLNHLTEDLLELLFAKKTSLGLCHNTIDTGLGAPFSRS LVLQVRIELIALIPLCATIITL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024283 [exp]	0	1
AT3G63460		EMB2221	transducin family protein / WD...		Lus10016374 [exp]	1.0	0.9837
AT5G27970			ARM repeat superfamily protein...		Lus10004117 [exp]	1.7	0.9801
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10034360 [exp]	2.0	0.9829
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10001216 [exp]	3.5	0.9778
AT5G27970			ARM repeat superfamily protein...		Lus10004116 [exp]	3.7	0.9751
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10000087 [exp]	4.5	0.9791
AT4G39420			unknown protein		Lus10006814 [exp]	4.5	0.9781
AT2G21390			Coatomer, alpha subunit (.1)		Lus10035884 [exp]	5.2	0.9720
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035941 [exp]	6.6	0.9713
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Lus10008240 [exp]	8.4	0.9537

Compare expression of checked genes

Lus10024283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.