Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44770 410 / 3e-146 ELMO/CED-12 family protein (.1) AT3G60260 410 / 3e-146 ELMO/CED-12 family protein (.1.2.3.4) AT1G67400 279 / 3e-94 ELMO/CED-12 family protein (.1) AT1G03620 268 / 2e-90 ELMO/CED-12 family protein (.1) AT3G03610 255 / 2e-84 ELMO/CED-12 family protein (.1) AT3G43400 184 / 3e-58 ELMO/CED-12 family protein (.1) AT5G21110 39 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003841 [exp] 452 / 2e-160 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1) Lus10037017 [exp] 301 / 4e-103 AT1G67400 386 / 2e-136 ELMO/CED-12 family protein (.1) Lus10015790 [exp] 299 / 2e-102 AT1G67400 385 / 4e-136 ELMO/CED-12 family protein (.1) Lus10039805 [exp] 253 / 1e-84 AT1G03620 327 / 3e-114 ELMO/CED-12 family protein (.1) Lus10018574 [exp] 247 / 6e-82 AT1G03620 328 / 7e-114 ELMO/CED-12 family protein (.1) Lus10009523 [exp] 243 / 1e-79 AT3G03610 429 / 4e-152 ELMO/CED-12 family protein (.1) Lus10020344 [exp] 239 / 4e-78 AT3G03610 428 / 1e-151 ELMO/CED-12 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G138700 [exp] 458 / 2e-165 AT3G60260 459 / 8e-166 ELMO/CED-12 family protein (.1.2.3.4) Potri.014G049800 [exp] 456 / 2e-164 AT3G60260 434 / 1e-155 ELMO/CED-12 family protein (.1.2.3.4) Potri.010G060700 [exp] 307 / 1e-105 AT1G67400 419 / 1e-149 ELMO/CED-12 family protein (.1) Potri.008G175301 [exp] 299 / 2e-102 AT1G67400 422 / 6e-151 ELMO/CED-12 family protein (.1) Potri.013G136200 [exp] 251 / 2e-82 AT1G03620 322 / 1e-110 ELMO/CED-12 family protein (.1) Potri.013G069000 [exp] 245 / 7e-81 AT3G03610 441 / 6e-157 ELMO/CED-12 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04727 [flax] [poplar] ELMO_CED12 ELMO/CED-12 family
Representative CDS sequence Show only first row Show all	>Lus10024285 pacid=23174905 polypeptide=Lus10024285 locus=Lus10024285.g ID=Lus10024285.BGIv1.0 annot-version=v1.0 ATGGAGGACAGAGGAGGGTCGTTCGTCGCTGTTAGAAGGATATCTCAAGGTCTCGACCGAGGCAACAGTACTTGCCATTCAAGCTCTGCTGAGGCTGTAG CAGGGTCTGCTGCTTGGCTCGGTCGTGGTCTTTCTTGTGTCTGTGCTCAGAGACAAGAAACTGATTCTCGTCCCTCGTTTGATTTATCCCCTGCTCAGGA AGAATGCTTGCAGAGGTTACAAAATCGTGTAGATGTTGCATATGATAGTACAGTCTCTGAGCATCAGGAAGCTCTGAGGGCACTATGGAATGCTGCTTTC CCCGAAGAAGAACTATGTGGTCTGATATCTGAGCAGTGGAAGGAGATGGGTTGGCAAGGAAAGGATCCTTCTACAGATTTTAGGGGAGGTGGTTTCATAT CATTGGAGAACTTGTTATTCTTTGCTAGGAATTTCCCGCAATCCTTCCAGGATCTTCTTCAAAAGCGGGAAGGTGAACGTTCTGTTTGGGAATACCCATT TGCTGTAGCTGGTGTGAATATCACATTCATGCTAATTCAGATGCTTGATCTTGAAGCAGTTAAACCGCGGTCTTTGGTTGGAGCTACGTTCTTAAAGTTC CTCACTGAGAATGAGTCAGCTTTTGATCTTCTGTACTGCATCACATTCAAGCTAATGGATAACCAATGGCTTACCATGCGCGCGTCATACATGGACTTCA ATTCGGTTATGAAATCCACCCGAAGACAACTGGAAAGGGAGCTTTTGCTTGACGACATAACACGGCTGGAAGAATTACCTTCATACAGTCTTCTGAAACG GTAG
AA sequence Show only first row Show all	>Lus10024285 pacid=23174905 polypeptide=Lus10024285 locus=Lus10024285.g ID=Lus10024285.BGIv1.0 annot-version=v1.0 MEDRGGSFVAVRRISQGLDRGNSTCHSSSAEAVAGSAAWLGRGLSCVCAQRQETDSRPSFDLSPAQEECLQRLQNRVDVAYDSTVSEHQEALRALWNAAF PEEELCGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLFFARNFPQSFQDLLQKREGERSVWEYPFAVAGVNITFMLIQMLDLEAVKPRSLVGATFLKF LTENESAFDLLYCITFKLMDNQWLTMRASYMDFNSVMKSTRRQLERELLLDDITRLEELPSYSLLKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10024285 [exp]	0	1
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	1.4	0.8758
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10041855 [exp]	2.4	0.8612
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10036540 [exp]	3.5	0.8580
AT1G71360			Galactose-binding protein (.1)		Lus10002929 [exp]	3.9	0.8525
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	4.9	0.8545
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10033291 [exp]	6.0	0.8227
AT3G54030			Protein kinase protein with te...		Lus10017198 [exp]	7.9	0.8264
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	8.5	0.8298
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Lus10041947 [exp]	10.2	0.8085
AT1G01710			Acyl-CoA thioesterase family p...		Lus10037853 [exp]	11.0	0.8167

Compare expression of checked genes

Lus10024285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.