Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57960 632 / 0 GTP-binding protein, HflX (.1) AT3G49725 122 / 3e-29 GTP-binding protein, HflX (.1) AT5G18570 54 / 2e-07 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034166 [exp] 50 / 3e-06 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10018403 [exp] 49 / 6e-06 AT3G49725 301 / 1e-97 GTP-binding protein, HflX (.1) Lus10043418 [exp] 45 / 0.0001 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 44 / 0.0004 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10024297 [exp] 42 / 0.001 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G031100 [exp] 637 / 0 AT5G57960 738 / 0.0 GTP-binding protein, HflX (.1) Potri.007G007700 [exp] 138 / 1e-34 AT3G49725 513 / 3e-176 GTP-binding protein, HflX (.1) Potri.010G022400 [exp] 54 / 2e-07 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 42 / 0.0007 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10024287 pacid=23174998 polypeptide=Lus10024287 locus=Lus10024287.g ID=Lus10024287.BGIv1.0 annot-version=v1.0 ATGTCTCTCTGCATCTGCTCTCTTCCTCGACCGTCGCCATTAATCCACTATGAACCGTATCCCCGATGGTATACATACTCTAACAAACCGAATTCCTTCA TCTCCCTTTCATCTCACCGCACCGGCCCGTCTTCTCTCGTCGTCGTCAGAGTCGCTCAACCGGGAGTTGATGCTCCATCTACTTCCGAGGAGAGCGCAGT GATAATTCCGGCTGGGGGAGGAGAACCCGGGGTCACCGAACCTGATGATGGAGCCTTCCGGACGGAATTGGAGGAGAAACCGGCGGTTCCTTCAACGAAA GTTAAGAAGAAGAGCAGAGAAGATGACGATAGCTTGGATAGTAGGTTCAAGCTTCGAAATGGAAGGGAGGTTTTTGCGGAGCAAGCCTACCTAGTTGGAG TTGAGCGCAAGGGGGATGTGGAGAATTCTTTTGGCATAGAGGAGTCACTGAAGGAACTGGCTCAGCTTGCTGACACTGCTGGACTTATGATCGTTGGTTC TACGTATCAGAAACTAGCTACACCAAATCCAAAGACATACATTGGATCTGGCAAGGTTGCAGAAATTAAGAGTGCAATTCGTGCTCTAGATGTCGAAACT GTGATATTCGATGATGAGCTTTCTGCTGGGCAACTTCGTAATTTGGAGAAGACATTTGGTGAAGATGTTAGAGTTGCATTGGCACAAATGGAGTACCAGT TACCTCGACTAACAAAGATGTGGAGCCATCTTGAGCGACAAGCTGGTGGCAAGACCAAGGGTATGGGTGAGAAGCAGATTGAAGTTGACAAACGTATTTT ACGTAATCAAATTGGTGTTCTTAAAAAGGAACTAGAATCTGTCAGGAAACACAGGAAGCAGTACCGGAACAGGCGTACTTCTGTACCTGTTCCTGTTGTA TCTTTGGTAGGGTATACGAATGCAGGGAAGAGTACTCTCTTAAACCAATTAACTGGAGCTGGCGTTCTAGCTGAGGATAAACTATTTGCTACCCTTGATC CCACTACAAGAAGAGTTCAGATGAACAATGGAAACGAGTTCCTTCTCACAGATACTGTCGGTTTCATCCAAAAGCTGCCCACTACCCTGGTTGCTGCTTT CAGAGCAACTCTGGAGGAGATATCTGAATCATCGTTGTTGGTTCATGTGATTGACATCAGCCATCCGCTAGTGGAGCAACAGATAGATGCTGTGGACAAA GTCCTGTTAGAACTAGATGTTTCATCAATACCAAAGTTAATGGTTTGGAATAAGGTTGATAAAGCAGCCGATCCTGAGAAAATCAAATTAGAAGCAGTGA AACGAGACGATGTCGTCTGCATATCTGCTTTGACTGGGGATGGCTTACAAGATTTCTGCGACGCGGTTCAGGGAAAACTAAAGGACTCGATGGTATGGGT GGAAGCTTTGATTCCGTTCGATAAAGGCGAGCTGTTAAGTACAGTGCATCAAGTTGGGATGGTAGAGACAACTGTACTGAATCCCGGAGGCGACATTGGT CAGGATTTGAATCCGGTCATCCCAAGTACGAAACTTTTCACCGGCGGAAATCAAATTTTCTTGCGAACGGACGAGAGAAATGTCGCCTTGACGATTGATG TTCGCGTGAGATGGTGGTGTGGTGTATGCGTCTTTTTTATTGAGGAAGAAGTTGGAGGAAGATAA
AA sequence Show only first row Show all	>Lus10024287 pacid=23174998 polypeptide=Lus10024287 locus=Lus10024287.g ID=Lus10024287.BGIv1.0 annot-version=v1.0 MSLCICSLPRPSPLIHYEPYPRWYTYSNKPNSFISLSSHRTGPSSLVVVRVAQPGVDAPSTSEESAVIIPAGGGEPGVTEPDDGAFRTELEEKPAVPSTK VKKKSREDDDSLDSRFKLRNGREVFAEQAYLVGVERKGDVENSFGIEESLKELAQLADTAGLMIVGSTYQKLATPNPKTYIGSGKVAEIKSAIRALDVET VIFDDELSAGQLRNLEKTFGEDVRVALAQMEYQLPRLTKMWSHLERQAGGKTKGMGEKQIEVDKRILRNQIGVLKKELESVRKHRKQYRNRRTSVPVPVV SLVGYTNAGKSTLLNQLTGAGVLAEDKLFATLDPTTRRVQMNNGNEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVIDISHPLVEQQIDAVDK VLLELDVSSIPKLMVWNKVDKAADPEKIKLEAVKRDDVVCISALTGDGLQDFCDAVQGKLKDSMVWVEALIPFDKGELLSTVHQVGMVETTVLNPGGDIG QDLNPVIPSTKLFTGGNQIFLRTDERNVALTIDVRVRWWCGVCVFFIEEEVGGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	0	1
AT5G27560			Domain of unknown function (DU...		Lus10029929 [exp]	1.0	0.9331
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10008555 [exp]	1.4	0.9048
AT4G17740			Peptidase S41 family protein (...		Lus10004402 [exp]	1.7	0.8951
AT5G59400			unknown protein		Lus10040799 [exp]	3.7	0.8836
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10043235 [exp]	5.2	0.8816
AT3G18500			DNAse I-like superfamily prote...		Lus10036357 [exp]	5.4	0.8563
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10024003 [exp]	6.6	0.8802
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012127 [exp]	7.3	0.8842
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10023508 [exp]	9.8	0.8870
AT3G01920			DHBP synthase RibB-like alpha/...		Lus10032046 [exp]	11.8	0.8020

Compare expression of checked genes

Lus10024287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.