Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45110 450 / 2e-159 Tetrapyrrole (Corrin/Porphyrin) Methylases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232200 [exp] 471 / 2e-167 AT1G45110 457 / 7e-162 Tetrapyrrole (Corrin/Porphyrin) Methylases (.1) Potri.002G030701 [exp] 165 / 8e-50 AT1G45110 150 / 2e-44 Tetrapyrrole (Corrin/Porphyrin) Methylases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00590 [flax] [poplar] TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Representative CDS sequence Show only first row Show all	>Lus10024288 pacid=23175002 polypeptide=Lus10024288 locus=Lus10024288.g ID=Lus10024288.BGIv1.0 annot-version=v1.0 ATGGCCACATCGCTTGCGGCAGGTCTTTCATGGCGGACTGTACCTCTCCACTTCTTTCGTGTCCCTGTTCGAATGAACCGTGAGACTGTGTACTCTTACT CAAGAAAGTCTGTTCTCTCCTTCTGTACCAAGTCTCTTGTAACTTCCGAGCTAACCGATTCAATACCAGAGGATCCAATGAAACGTAGTCCTCTTAGACC TGGACTGTACTTAGTCGGGACTCCGATTGGTAATCTGGAAGATATCACTTTCAGGGCTCTTCGTGTCCTGAAATCTGCTGATGTCATACTTTCTGAGGAC ACAAGGCATTCAGGCAAATTACTCCAGTGTTACAACATCAAGACTCCTCTCTTGAGCTATCACAAATTCAATGAATCTCAAAGAGAACAGACTGTGTTGA ACAGGCTTAGACAAGGTGAAATCGTTGCACTGATAAGTGATGCTGGAATGCCAGGAATTAGTGATCCTGGTACTGCACTGGCCAAGTTATGTGCACACGA ACACATTCCTGTGGTACCTATACCTGGGGCTTGTGCTGTTGTAGCTGCTTTATCTGCCTCAGGATTGGGGACAGATGAGTTTACCTTTGGTGGATTCCTT CCCAAGCATGCTGGATCTAGGAGAGAAAGGATAACAGCTTCAGCTAAGGAAGCAAGAACGCAAGTATTCTATGTTCCACCACACAAGTTGTTGCAATTTC TTGAGGAGGCTTCGTCAGTATATGGTGATTTGAGGCGGTGTGTCATAGCTCGTGAGATAACCAAATTACATGAAGAGTTCTGGCGGGGTACAGTGGGGGA AGCAAAAGAAGCATTTAATAATCGGCAAGTGAAGGGAGAGATAACACTGTTGATCGAAGGCAATTCAAACTGCCTAGTTGAAACTCCGTCGGAGATTCAG CTTGAACATGAACTGCGAGACCTGATCTCCCAGGGGCATTGCCTCTCAAAGTATAACAATGGTCAGGCTGTCAAATTGGTAGCCGAGGGATCGCCGGTGA AAAAAAAGACAATTTACGCACTAGCCTTGCGGAAATTCGGAAAGCAAGAAGAAACAGAGGATGTGTAA
AA sequence Show only first row Show all	>Lus10024288 pacid=23175002 polypeptide=Lus10024288 locus=Lus10024288.g ID=Lus10024288.BGIv1.0 annot-version=v1.0 MATSLAAGLSWRTVPLHFFRVPVRMNRETVYSYSRKSVLSFCTKSLVTSELTDSIPEDPMKRSPLRPGLYLVGTPIGNLEDITFRALRVLKSADVILSED TRHSGKLLQCYNIKTPLLSYHKFNESQREQTVLNRLRQGEIVALISDAGMPGISDPGTALAKLCAHEHIPVVPIPGACAVVAALSASGLGTDEFTFGGFL PKHAGSRRERITASAKEARTQVFYVPPHKLLQFLEEASSVYGDLRRCVIAREITKLHEEFWRGTVGEAKEAFNNRQVKGEITLLIEGNSNCLVETPSEIQ LEHELRDLISQGHCLSKYNNGQAVKLVAEGSPVKKKTIYALALRKFGKQEETEDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Lus10024288 [exp]	0	1
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10028547 [exp]	4.4	0.7996
AT3G57930			unknown protein		Lus10031806 [exp]	6.2	0.8637
AT1G80245			Spc97 / Spc98 family of spindl...		Lus10040637 [exp]	7.2	0.7908
AT3G09870			SAUR-like auxin-responsive pro...		Lus10013819 [exp]	10.5	0.8509
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10010732 [exp]	12.6	0.7991
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10042477 [exp]	16.2	0.6934
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10042095 [exp]	16.3	0.8272
AT5G54290		CcdA	cytochrome c biogenesis protei...		Lus10037881 [exp]	18.7	0.8316
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012466 [exp]	22.2	0.7798
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10023654 [exp]	25.5	0.8312

Compare expression of checked genes

Lus10024288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.