Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75450 706 / 0 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT2G41510 517 / 2e-179 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 498 / 1e-172 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT2G19500 462 / 3e-159 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT4G29740 459 / 1e-157 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT5G56970 453 / 3e-155 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT5G21482 431 / 2e-146 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT5G06580 56 / 6e-08 FAD-linked oxidases family protein (.1) AT3G47930 52 / 7e-07 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003845 [exp] 773 / 0 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10026471 [exp] 432 / 7e-147 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10031188 [exp] 417 / 4e-141 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1) Lus10031200 [exp] 390 / 2e-130 AT2G19500 464 / 1e-159 cytokinin oxidase 2 (.1) Lus10027611 [exp] 372 / 2e-124 AT5G56970 407 / 3e-138 cytokinin oxidase 3 (.1) Lus10005317 [exp] 344 / 3e-114 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 346 / 1e-113 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10031765 [exp] 337 / 7e-107 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4) Lus10016363 [exp] 317 / 6e-104 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G030500 [exp] 747 / 0 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 739 / 0 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.003G203600 [exp] 521 / 0 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.006G047900 [exp] 513 / 1e-178 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.001G020900 [exp] 508 / 1e-176 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.006G152500 [exp] 497 / 3e-172 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.016G044100 [exp] 497 / 4e-172 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G221000 [exp] 439 / 2e-149 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.007G066100 [exp] 415 / 6e-140 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.016G040300 [exp] 49 / 1e-05 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10024289 pacid=23175027 polypeptide=Lus10024289 locus=Lus10024289.g ID=Lus10024289.BGIv1.0 annot-version=v1.0 ATGGCGTGCCACCTTGTGCTCATAGCAACAGTAGTACTCGGACTAACCCTCGACGACTTCCAGCTCAGCTTAGACTCGGCCGACCTTGCTAGGGTATCCA TGGATTTCGGAAACATGGCTACACGAGTGGAGCCTGCTGCAGTGTTCCACCCGACCTCAGACCAGGACGTCGCTCAGTTGGTTAGAGCGGCGTACAAGGG AGGGTTTACGGTCTCGGCAAGAGGCCACGGGCACTCCATCAACGGCCAGGCGATGAGCGGAGGAGTTGTGATTGACATGAGTCGGAGGAAGATGTCTTCG CCGCCGCCGGAGCCGAAGGTGGCGGCGGAGGAGATGCACGTGGATGTGTGGGGTGGAGAACTGTGGATAGAGGTGCTGAGGAGGTGTTTGGAATATGGGT TGGCCCCCAAATCTTGGACGGATTACTTGTACCTGTCGGTGGGCGGGACGCTGTCCAATGCCGGGATTAGCGGCCAGGCTTTTAACCACGGCCCTCAGAT TAGCAACGTTCACGAGCTCGATGTCGTCACTGGTAAAGGGGAGGTGAAGAGGTGTTCAGAAGAGGAGAACGAAGAGCTGTTCCATGGGGTGCTAGGTGGG CTAGGGCAGTTTGGAATCATCACTAGGGCTCGAATTGCGCTTGAGCCGGCTCCCCAAAGGGTGAGGTGGATCAGGGTATTGTACTCCAACTTTTCAACGT TTACAAAGGACCAAGAGCATCTCATCTCGTTGAATGGAAATAATAAGTTCGATTATGTGGAAGGGTTTGTGATTGTGGATGAAGGGTTGATCAATAATTG GAGATCATCCTTCTTCTCCCCTAGTAACCCGGTCAAAATCACTTCACTCGGCACCCATGGAGGGGTCCTTTACTGCTTGGAAGTCACCAAGAACTACCAT GAATCCACCCTTGACACCCTCGATCTGGAAATAGAAACTTTGATGAAGAAACTAAACTTTATACCGTCGTCGGTGTTCACGACGGATCTGGCGTACGTGG AATTCTTGGACAGAGTTCACAAAGCAGAACTGAAGCTGAGAGCTAAAGGACTCTGGGAAGTTCCTCACCCTTGGCTTAACCTGTTTGTCCCCAAATCCAG GATCCACGACTTTGACAAGGGAGTGTTCAAGGGCATTTTGGGGAATAACAAGACCAGCGGCCCAATTCTTATTTACCCAATGAACAAGAGCAAGTGGGAC GAGAGGAGCTCGGCGGTAACGCCGGAAGAGAAGGAGGAGGTGTTTTACGTGGTGGCGCTGCTGAGGTCGGCGGTAGATCAGGGGGAGGGCGGAGAAGAGA GCAGCAGGACGCTGGAGTACCTGAGAAATCAGAACAGTGAGATATTGAGATACTGTGACGAGCAAGGAATCAAAGTGAAACAGTACTTACCTCACTACAC CACGGTAAAGGAATGGGCCACACACTTTGGGGATCACAAGTGGGAAAGGTTTAACACGAGGAAGATGGCATTCGATCCTCGCCGTATCTTAGCAACTGGC CAACGTATATTCAAACCCAACTTTGCTGACACAAACATGCCTGCTGCTGCAAATACAGATCTTCCCACTACACTTTACGCCACCGCTAGGTAG
AA sequence Show only first row Show all	>Lus10024289 pacid=23175027 polypeptide=Lus10024289 locus=Lus10024289.g ID=Lus10024289.BGIv1.0 annot-version=v1.0 MACHLVLIATVVLGLTLDDFQLSLDSADLARVSMDFGNMATRVEPAAVFHPTSDQDVAQLVRAAYKGGFTVSARGHGHSINGQAMSGGVVIDMSRRKMSS PPPEPKVAAEEMHVDVWGGELWIEVLRRCLEYGLAPKSWTDYLYLSVGGTLSNAGISGQAFNHGPQISNVHELDVVTGKGEVKRCSEEENEELFHGVLGG LGQFGIITRARIALEPAPQRVRWIRVLYSNFSTFTKDQEHLISLNGNNKFDYVEGFVIVDEGLINNWRSSFFSPSNPVKITSLGTHGGVLYCLEVTKNYH ESTLDTLDLEIETLMKKLNFIPSSVFTTDLAYVEFLDRVHKAELKLRAKGLWEVPHPWLNLFVPKSRIHDFDKGVFKGILGNNKTSGPILIYPMNKSKWD ERSSAVTPEEKEEVFYVVALLRSAVDQGEGGEESSRTLEYLRNQNSEILRYCDEQGIKVKQYLPHYTTVKEWATHFGDHKWERFNTRKMAFDPRRILATG QRIFKPNFADTNMPAAANTDLPTTLYATAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Lus10024289 [exp]	0	1
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	4.5	0.7683
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10029208 [exp]	6.2	0.7352
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10041562 [exp]	9.5	0.7382
AT4G17486			PPPDE putative thiol peptidase...		Lus10043293 [exp]	10.9	0.7572
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	15.6	0.7475
AT4G35160			O-methyltransferase family pro...		Lus10001510 [exp]	22.6	0.7533
AT1G60783			unknown protein		Lus10006204 [exp]	33.6	0.7421
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021203 [exp]	34.5	0.6881
					Lus10027917 [exp]	37.1	0.7463
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10025394 [exp]	42.0	0.6833

Compare expression of checked genes

Lus10024289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.