Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19715 591 / 0 Mannose-binding lectin superfamily protein (.1.2.3) AT1G73040 154 / 1e-43 Mannose-binding lectin superfamily protein (.1) AT1G52030 109 / 1e-24 MBP1.2, F-ATMBP, MBP2 myrosinase-binding protein 2 (.1.2) AT1G52070 103 / 7e-24 Mannose-binding lectin superfamily protein (.1) AT1G52040 104 / 1e-23 ATMBP, MBP1 myrosinase-binding protein 1 (.1) AT3G16430 100 / 6e-23 JAL31 jacalin-related lectin 31 (.1.2) AT3G16420 99 / 1e-22 JAL30, PBP1 JACALIN-RELATED LECTIN 30, PYK10-binding protein 1 (.1.2.3) AT3G16450 97 / 4e-22 JAL33 Jacalin-related lectin 33, Mannose-binding lectin superfamily protein (.1.2.3) AT1G33790 97 / 2e-21 jacalin lectin family protein (.1.2) AT2G39310 97 / 3e-21 JAL22 jacalin-related lectin 22 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024291 [exp] 259 / 1e-77 AT1G19715 438 / 1e-146 Mannose-binding lectin superfamily protein (.1.2.3) Lus10037605 [exp] 144 / 7e-38 AT1G73040 198 / 1e-62 Mannose-binding lectin superfamily protein (.1) Lus10006866 [exp] 146 / 2e-36 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232400 [exp] 691 / 0 AT1G19715 609 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Potri.002G030400 [exp] 677 / 0 AT1G19715 590 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Potri.005G232500 [exp] 318 / 9e-101 AT1G19715 486 / 2e-166 Mannose-binding lectin superfamily protein (.1.2.3) Potri.012G140001 [exp] 161 / 4e-46 AT1G73040 214 / 1e-71 Mannose-binding lectin superfamily protein (.1) Potri.017G010900 [exp] 123 / 5e-30 AT3G16460 135 / 5e-34 jacalin-related lectin 34, Mannose-binding lectin superfamily protein (.1.2) Potri.010G144900 [exp] 57 / 2e-09 AT1G05760 92 / 5e-24 restricted tev movement 1, Mannose-binding lectin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0568 [flax] [poplar] Man_lectin PF01419 [flax] [poplar] Jacalin Jacalin-like lectin domain
Representative CDS sequence Show only first row Show all	>Lus10024290 pacid=23175041 polypeptide=Lus10024290 locus=Lus10024290.g ID=Lus10024290.BGIv1.0 annot-version=v1.0 ATGAGCTTTGACAACGGCGGCTCCGTCAGTGTAGGGCCGTGGGGTGGGCATGGCGGAAACCGATGGGACGACGGCGTATATACTGGCGTCCGGCAAATGC TGATAGCTCATGGATCCGGCATTGATTCACTCCAGTTTGAGTATGACAATAAAGGTTCCTCAGTTTGGTCACAGAAGCACGGCGGTAGTGGCGGCAACAA AACTGACAAGGTAAAACTGGACTACCCAAATGAGTACCTTACATCTATCCAGGGACATTACGGCAGCCTGTACGACTGGGGGCCAGTTATGGTTCGATCT CTGACGTTCGAAACAAACAAAAGAAAGTACGGGCCTTACGGAGATGAACAAGGCACCTATTTCTCCCTCCCAACCAACGGAGCCAAAATTGTTGCCTTTC ATGGAAGAGGCGACTGGTACATTGACGCCATTGGTATCAAATATGAGAAGTCCGTACAACAGACACCCAAGGCAGCAGCTTCGAAAGCAGCTCTGGTCCA TAGCGCCAACTACTATAACGTAAACGGCGGTGGAGCTGATAACCTTGGATACTCTGTTATACAAGGAAGTGCTGGAAATAGCTACGACATCGTAGTTGCT GTCAGGCAGAAGAGTCACGACACCCCTCTCAACCACAATAATCAACACAACAACAACAGTAACAAAAACAACAAGAACAGTGCTATCCATTCCAAAATCT CGCCTCCGAAACAGAGTCCTCTACTCCTCGAGGCCAACAAAGCTCCAGGGACTTTGGATAAGGCTGGTAAAATTGGAGGGCAGCCCACAAAAAATACTCA AGGGTACCTAAAACACGGGCCATGGGGTGGACAAGGAGGAAGTGCATTTGACGATGGGACATACAGTGGTATCAGGCAGATCTATGTCTCTAGAAACGTT GGAATTGTCTACTTGAGAGCTCAATACGATCGTGACGGCCAGCCAGTTTGGGGGAGCAGACATGGAGGCACAGGAGGGTTCAAAACTGACAAGATAGTGT TTGACTACCCACAAGAGATCCTGACTCACATAACTGGAACGTACGGTCCACTAATGCATATGGGTCCGAACATAGTAAAGTCCCTAACTTTCTTCACAAA CAAAGGGAAACATGGACCATTCGGGGAGGAACATGGTCCATCTTTCTTTAGCAAAGTGAATGAAGGAAGAATCGTTGGTTTCCACGGGAGAGAAGGTTTG TTCTTGGATGGAATTGGTGTTCATGTCAAGGAAGGGATAGTTACGCCGCCTAAGAGCCATTTATCCGATGCGATTGTGAAATTTGGAGGAGCTTCTGGTA ACAATATTAATGTTGCAGAGATTGATAACTCTCCTTGGTGTAATAAGCTAGTGCTTGCCAACCAAGGGCATGCAGCTGAACAGGTAGCATATGGGGTGGT GAAAGAGTCGGTACCATTCGGACCAGGACCATGGGGAGGAGATGGAGGAAGGCCGTGGGATGATGGAGTATTCTCAGGGATCCAACAGATATTCTTGACA AGAACTGTTGATGCCGTATGCTCAATCCAGATTGAGTATGATCGCAGTGGCCAGTCAGTTTGGTCTGTCAAACATGGCACCACTACTGGAACTTCTACTC ATAGGGTGAAACTAGATTATCCACATGAGATCTTACTGTCGATTTCTGGCTACTATGGGCCGACCAACAGAGAGGACAAGCTGAAAGTTGTGAGGTCACT TTCGTTTCAGACGAGTAGAGGGAAGTTGGGTCCATTTGGGGAAGAAGTAGGGACATTTTTCACTTCTTCTACAGCTGAAGGCAAAGTAGTGGGTTTCCAT GGGAGGAGTGGAGCCTATTTGGATGCTATTGGTTTGCATATGCAGTACTGGTTAGGGAGTCACAAACCAACCAAGACTTCTATGTTTAAGAGGTATGCTT GA
AA sequence Show only first row Show all	>Lus10024290 pacid=23175041 polypeptide=Lus10024290 locus=Lus10024290.g ID=Lus10024290.BGIv1.0 annot-version=v1.0 MSFDNGGSVSVGPWGGHGGNRWDDGVYTGVRQMLIAHGSGIDSLQFEYDNKGSSVWSQKHGGSGGNKTDKVKLDYPNEYLTSIQGHYGSLYDWGPVMVRS LTFETNKRKYGPYGDEQGTYFSLPTNGAKIVAFHGRGDWYIDAIGIKYEKSVQQTPKAAASKAALVHSANYYNVNGGGADNLGYSVIQGSAGNSYDIVVA VRQKSHDTPLNHNNQHNNNSNKNNKNSAIHSKISPPKQSPLLLEANKAPGTLDKAGKIGGQPTKNTQGYLKHGPWGGQGGSAFDDGTYSGIRQIYVSRNV GIVYLRAQYDRDGQPVWGSRHGGTGGFKTDKIVFDYPQEILTHITGTYGPLMHMGPNIVKSLTFFTNKGKHGPFGEEHGPSFFSKVNEGRIVGFHGREGL FLDGIGVHVKEGIVTPPKSHLSDAIVKFGGASGNNINVAEIDNSPWCNKLVLANQGHAAEQVAYGVVKESVPFGPGPWGGDGGRPWDDGVFSGIQQIFLT RTVDAVCSIQIEYDRSGQSVWSVKHGTTTGTSTHRVKLDYPHEILLSISGYYGPTNREDKLKVVRSLSFQTSRGKLGPFGEEVGTFFTSSTAEGKVVGFH GRSGAYLDAIGLHMQYWLGSHKPTKTSMFKRYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	0	1
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Lus10014957 [exp]	1.0	0.9645
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	2.0	0.9617
AT2G23790			Protein of unknown function (D...		Lus10016305 [exp]	2.6	0.9448
AT4G27290			S-locus lectin protein kinase ...		Lus10016862 [exp]	2.8	0.9603
AT1G31335			unknown protein		Lus10040642 [exp]	4.2	0.9450
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10010362 [exp]	4.2	0.9609
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10009321 [exp]	4.5	0.9545
AT3G25290			Auxin-responsive family protei...		Lus10000915 [exp]	4.9	0.9321
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10004007 [exp]	5.9	0.9124
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10009582 [exp]	6.2	0.9272

Compare expression of checked genes

Lus10024290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.