Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19715 432 / 3e-144 Mannose-binding lectin superfamily protein (.1.2.3) AT1G73040 162 / 2e-46 Mannose-binding lectin superfamily protein (.1) AT3G16460 154 / 2e-39 JAL34 jacalin-related lectin 34, Mannose-binding lectin superfamily protein (.1.2) AT3G16470 150 / 4e-39 JAL35, JR1 JASMONATE RESPONSIVE 1, jacalin-related lectin 35, Mannose-binding lectin superfamily protein (.1.2.3) AT1G52040 143 / 1e-36 ATMBP, MBP1 myrosinase-binding protein 1 (.1) AT2G39310 139 / 2e-35 JAL22 jacalin-related lectin 22 (.1.2.3) AT5G49870 137 / 4e-34 Mannose-binding lectin superfamily protein (.1) AT2G39330 135 / 4e-34 JAL23 jacalin-related lectin 23 (.1) AT2G25980 134 / 8e-34 Mannose-binding lectin superfamily protein (.1) AT1G33790 136 / 3e-33 jacalin lectin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024290 [exp] 273 / 8e-83 AT1G19715 607 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Lus10037605 [exp] 144 / 9e-38 AT1G73040 198 / 1e-62 Mannose-binding lectin superfamily protein (.1) Lus10006866 [exp] 145 / 2e-36 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232500 [exp] 630 / 0 AT1G19715 486 / 2e-166 Mannose-binding lectin superfamily protein (.1.2.3) Potri.005G232400 [exp] 296 / 4e-91 AT1G19715 609 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Potri.002G030400 [exp] 278 / 2e-84 AT1G19715 590 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Potri.017G010900 [exp] 165 / 2e-44 AT3G16460 135 / 5e-34 jacalin-related lectin 34, Mannose-binding lectin superfamily protein (.1.2) Potri.012G140001 [exp] 156 / 3e-44 AT1G73040 214 / 1e-71 Mannose-binding lectin superfamily protein (.1) Potri.010G144900 [exp] 49 / 1e-06 AT1G05760 92 / 5e-24 restricted tev movement 1, Mannose-binding lectin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0568 [flax] [poplar] Man_lectin PF01419 [flax] [poplar] Jacalin Jacalin-like lectin domain
Representative CDS sequence Show only first row Show all	>Lus10024291 pacid=23174995 polypeptide=Lus10024291 locus=Lus10024291.g ID=Lus10024291.BGIv1.0 annot-version=v1.0 ATGGACCCGCCGGCTATGCGTTGTCTCTCAGAAAATAAAGAATTATGCTGTCATTATCTCAAGGTTCTTGATGCATTAGGTTCCCTCGGGCCTCAGCTGC TATATATGCCTTCAATGGCAGGCGGGGATGATAGTCGTAAAGAGTCGAGTAAAATAATTGGAGAGTGGGAAAGTAACTATGGATCGGGAAAAGAGAGTAG TAGTCATATAACAGTGGGACCGTGGGGAGGTCAAAGCGGAGCTCGGTGGGACGATGGCGTTTACACAGGCATGAGGCAAGTGATCATCTTGCATGGAGCA GCCATTGTTTCCATCCAATTCGAGTATGACAAGAAAGGTACCTCTGTTTGGTCAGACAAGCATGGCGGAACTGGCAACATCAAGACTAATAAGGTGAAGT TTGAGTATCCGGAGGAGTATCTGGTTTCAATCAGCGGGTATTATGGGGGCCTAGTTGAGTTTGGTCCACCACTTGTTCGATCAATTGTCCTAGAGAGCAA CACCAAAAAATATGGTCCTTACGGGATTCAACAGGGAACCCATTTCTCTGTCCCAGTCGACGGTGCCAAAGTGGTGGGTTTCCATGGTCGTAGCAGTTGG TATCTCGACTCCATAGGTGTCCATTTAATTCCTCCTTTCCACCAAAATCCATTCAACTCTTTGACACCTCAAGGTTTTCCATCCAAACCAAGAGGACCCA ATATTCATGACTATATCGACGACTCTCGAGTTGTTGAAAGCCGCCGCCAACATATGCATACTACTGAGTCGGCTCAAATAATTTCTAATGGAAGTGTGAA GTTGAAGCAGGGTGGGCCTTGTGGAGGAAGTGGGGGAGCCATTTTCGACGATGGAGTTCATACAGGAGTTCGTGAAGTTCATTTGACTCGCTCTAACAAG GGAGTTATTTCTATATGGGTTTGTTATGATTTGAATGGAAATGCAGTTTGGGGAGAAAAGAATGGTGGAACTGGAGGCATCCGACTTGACAGGATTGGTT TCGATTACCCATCAGAAGTCTTGACCCACATCACAGGATACTACGGTTCAACAATCTCTCGAGGGCCTGCAATTGTCAGGTCAATCACATTCCATACAAA CAGAAGGAAGTATGGACCATTTGGAGATGAACAGGGGATCTCCTTTACCTCTGGCTCTAACAATGGCAAAATTGTCGGCTTCCATGGGAGAAGAGGAAAT AACGTTGACAGCATTGGAGTTCATTTCCTGGAAGGAACAACAACAACAACAACAACAATGGCAACAACAACATCTCCACAATTGATACGACGTTCTACTT TCAATATGATGAGAGAAATTTCTCTCCGACAAGAACCTACAATTCTTCCTGCCGCAAATGCAATAGTGGTTAAAGAATTTTCAGTAACATTGAGATCAGG GGCATGGGGCGGGGAGAGAGGAAAGGCTTGGGATGATGGAGCTTTCAACGGGGTTAAGAGGATTTTCCTAACAAGAGGAGAAGCTATATATTGCATACAA GCTGAGTACGAAGATAATGACGGTCAATTTGTTTGGTCACCCAGGCATGGAAGTGGCAGTGAAGGCAACTCTCAGATGATCAAATTTGACTACCCACGAG AATTCCTCACGGTTGTCACCGGTTACCATGGCTCCCTCACCGGCGATGAGAAGAGCAAAGCCATACACTCGCTGACGTTCTACACCAACAGTGGAAAGTA TGGACCGTACGGGAAAGAGTTAGGGACGTTCTTCACATCTGCAGAGAGTAAAGGAAAGATTGTTGGGTTTCATGGAAGGAGCGGTTGTTACTTAAACGCA CTTGGAGTTCACATTCAACAACAACAATCATCAGTTTCCCATCTTGATTTAGACCCGGCGGTGGCCGGACATTTAGGTGGTGGCAGCGGCGGTAGCAAAG CCTCTAAGCTGAGTGTTGGCAGGTTTATCAAGGCAAACATATTTTCACCCTAA
AA sequence Show only first row Show all	>Lus10024291 pacid=23174995 polypeptide=Lus10024291 locus=Lus10024291.g ID=Lus10024291.BGIv1.0 annot-version=v1.0 MDPPAMRCLSENKELCCHYLKVLDALGSLGPQLLYMPSMAGGDDSRKESSKIIGEWESNYGSGKESSSHITVGPWGGQSGARWDDGVYTGMRQVIILHGA AIVSIQFEYDKKGTSVWSDKHGGTGNIKTNKVKFEYPEEYLVSISGYYGGLVEFGPPLVRSIVLESNTKKYGPYGIQQGTHFSVPVDGAKVVGFHGRSSW YLDSIGVHLIPPFHQNPFNSLTPQGFPSKPRGPNIHDYIDDSRVVESRRQHMHTTESAQIISNGSVKLKQGGPCGGSGGAIFDDGVHTGVREVHLTRSNK GVISIWVCYDLNGNAVWGEKNGGTGGIRLDRIGFDYPSEVLTHITGYYGSTISRGPAIVRSITFHTNRRKYGPFGDEQGISFTSGSNNGKIVGFHGRRGN NVDSIGVHFLEGTTTTTTTMATTTSPQLIRRSTFNMMREISLRQEPTILPAANAIVVKEFSVTLRSGAWGGERGKAWDDGAFNGVKRIFLTRGEAIYCIQ AEYEDNDGQFVWSPRHGSGSEGNSQMIKFDYPREFLTVVTGYHGSLTGDEKSKAIHSLTFYTNSGKYGPYGKELGTFFTSAESKGKIVGFHGRSGCYLNA LGVHIQQQQSSVSHLDLDPAVAGHLGGGSGGSKASKLSVGRFIKANIFSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	0	1
AT2G45040			Matrixin family protein (.1)		Lus10007791 [exp]	1.4	0.8550
AT3G62930			Thioredoxin superfamily protei...		Lus10029441 [exp]	1.7	0.8621
AT5G05340			Peroxidase superfamily protein...		Lus10009932 [exp]	2.4	0.8494
					Lus10039327 [exp]	3.6	0.8220
AT1G27180			disease resistance protein (TI...		Lus10023093 [exp]	4.5	0.8279
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10040108 [exp]	4.5	0.8482
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	5.7	0.8489
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	5.9	0.8417
AT4G19410			Pectinacetylesterase family pr...		Lus10034762 [exp]	6.2	0.7802
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	6.5	0.8454

Compare expression of checked genes

Lus10024291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.