Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75460 313 / 3e-109 ATP-dependent protease La (LON) domain protein (.1) AT1G19740 310 / 4e-108 ATP-dependent protease La (LON) domain protein (.1) AT1G18660 68 / 1e-13 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006131 [exp] 193 / 1e-64 AT1G19740 176 / 1e-56 ATP-dependent protease La (LON) domain protein (.1) Lus10015722 [exp] 64 / 3e-12 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 57 / 1e-09 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G029900 [exp] 336 / 2e-118 AT1G75460 373 / 3e-131 ATP-dependent protease La (LON) domain protein (.1) Potri.005G232800 [exp] 323 / 2e-113 AT1G75460 366 / 2e-128 ATP-dependent protease La (LON) domain protein (.1) Potri.012G068100 [exp] 61 / 3e-11 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF02190 [flax] [poplar] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024294 pacid=23174938 polypeptide=Lus10024294 locus=Lus10024294.g ID=Lus10024294.BGIv1.0 annot-version=v1.0 ATGATGCACACTCTCCTCCAGACCGACCTCCGGTTTGGCGTCCTCTACTCTGACCCGGCCACTGGCACAGCGGAGGTCGGCTGCGTTGGGGAAATCATCA AGCACGAGCGCCTTGCCGACGACCGCTTCTTCCTGATATGTAAAGGCCAGGAGAGGTTCCGCGTCGTGAACCTCGTCCGCAGCAAGCCGTATTTGGTCGC CGGGGTGCGGTGGCTGGAGGATCGGCCCTCCGGGGACGAGGACGTGGATAAGTTGGCGACGGAGGTTGAGACGTATATGAAGGATGTAATCAGGTTGTCG AATCGGCTGAATGGGAAACCGGATAAAGAGGCCCAGGACCTGCGGAGGAATCTGTTTCCAACTCCATTTTCGTTCTTCGTCGGGAGTACGTTCGAAGGCG CGCCGAGGGAGCAGCAGGCTTTGCTGGAGTTGGAAGACACGGCGGCGAGGTTGAAGCGGGAGAAAGAGACGTTGAGGAACACGTTGAATTACTTGACCGC CGCTTCTGCAGTTAAAGACGTGTTCCCTTCTTCCTGA
AA sequence Show only first row Show all	>Lus10024294 pacid=23174938 polypeptide=Lus10024294 locus=Lus10024294.g ID=Lus10024294.BGIv1.0 annot-version=v1.0 MMHTLLQTDLRFGVLYSDPATGTAEVGCVGEIIKHERLADDRFFLICKGQERFRVVNLVRSKPYLVAGVRWLEDRPSGDEDVDKLATEVETYMKDVIRLS NRLNGKPDKEAQDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAASAVKDVFPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75460			ATP-dependent protease La (LON...		Lus10024294 [exp]	0	1
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10023509 [exp]	3.5	0.9183
AT1G05140			Peptidase M50 family protein (...		Lus10027190 [exp]	6.6	0.9141
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10040391 [exp]	7.1	0.9081
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10002821 [exp]	12.2	0.9026
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016176 [exp]	14.3	0.8922
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	14.4	0.9043
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10018273 [exp]	16.4	0.8955
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10004708 [exp]	18.9	0.8774
AT5G57345			unknown protein		Lus10001632 [exp]	19.1	0.8981
AT1G74470			Pyridine nucleotide-disulphide...		Lus10001642 [exp]	19.8	0.8980

Compare expression of checked genes

Lus10024294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.