Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18570 146 / 1e-37 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G07615 127 / 7e-32 GTP-binding protein Obg/CgtA (.1) AT1G30580 66 / 3e-11 GTP binding (.1) AT4G39520 59 / 3e-09 GTP-binding protein-related (.1) AT1G56050 57 / 2e-08 GTP-binding protein-related (.1) AT1G72660 55 / 7e-08 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G17470 55 / 7e-08 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G80770 43 / 0.0003 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006129 [exp] 449 / 3e-157 ND 40 / 0.003 Lus10006128 [exp] 257 / 1e-84 AT5G18570 62 / 5e-12 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 157 / 3e-41 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10034166 [exp] 150 / 2e-39 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 122 / 8e-30 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10040813 [exp] 99 / 1e-22 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1) Lus10038543 [exp] 68 / 4e-12 AT1G30580 713 / 0.0 GTP binding (.1) Lus10023261 [exp] 68 / 4e-12 AT1G30580 711 / 0.0 GTP binding (.1) Lus10005800 [exp] 61 / 1e-09 AT4G39520 682 / 0.0 GTP-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G029600 [exp] 619 / 0 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.005G233101 [exp] 157 / 3e-46 ND / Potri.010G022400 [exp] 161 / 6e-43 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 119 / 1e-28 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.001G465900 [exp] 66 / 3e-11 AT1G30580 681 / 0.0 GTP binding (.1) Potri.011G164000 [exp] 65 / 4e-11 AT1G30580 691 / 0.0 GTP binding (.1) Potri.007G080900 [exp] 61 / 7e-10 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.001G457900 [exp] 57 / 2e-08 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.003G063500 [exp] 55 / 8e-08 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G170300 [exp] 54 / 8e-08 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase CL0023 [flax] [poplar] PF01018 [flax] [poplar] GTP1_OBG GTP1/OBG
Representative CDS sequence Show only first row Show all	>Lus10024297 pacid=23174988 polypeptide=Lus10024297 locus=Lus10024297.g ID=Lus10024297.BGIv1.0 annot-version=v1.0 ATGCTTTCCATGGCTACACTCCCGCCATCTTCCTTTCTCCGACCTCAATGCGCCGACCGCACTTTATTCCTTCGCCTGCATCCTCAACAAAGGTCCAATT TCGAAACATTAGGATTTTTCCGGATAGAGTGTAGATTCGCCAGAGTGAAGCAGGCTCCGGCGAAAAACCCTGATTCCTTAGTGAAGGAGCCTCACAAGTA TTTCGACCAGGTGATCGTCACTGTTCGTTCTGGCGACGGAGGGCATGGGGCAGTACTCAAGGTGCCTAACCAGGGACTCACTAAGGCTGCTGGGAGGCAA GACGATGAAAAATCCAAGTCCAAGTCCAAGTCCAAGTCCAAGTCCAATAAAATGGCACCCTTCAAAAGGGATTTTGATGGATCGCTAATTCTGCCCATTG GTGGACACGGCGGTGATGTTGTTATCTATGCAGACGAGGGGAAAGACACTCTATTGGAGTTGCATACCAAAGGACGTTTCAGCGCCAAGCGTGGCGGAAA TGTGAATTCCATGGGTGTTTTTACTTCTCAGTTGCGTAATGGACTTGCTTCCCCAAGCTTGCGTATTCCTGTGCCTCTTGGCACAGTTGTGAAGCTTAAA AGAGGCAAGTTGTTGGCTGATCTAACCCACCCTGGTCAGGAAATACTCGTTGCAAGAGGTGGGCAAGGAGGGATTAGCTTGCTTGACGCACCAGAGCATA GAAAGAAAAGCTTAATGAGTCTAACCACTAATGTTCTGAGAGATGATAGTGATAAGGTATTAATTCTTGGACAACCTGGTGAAGAACTTAGTTTGGAGTT GATTCTACGAGTTGTAGCTGATGTTGGTTTAGTTGGACTCCCAAATGCTGGAAAGTCAACTCTTTTGTCTGCCATCACACTTGCAAGGCCTGATATTGCT GATTACCCTTTTACGACTTTGATGCCAAACCTTGGCCGTCTGGACGGGGATCCAGCTTTGGGACCTGAGATGTATTCATCTGCAGCAACATTGGCAGATC TTCCAGGTCTTATAGAAGGTGCTCATCTGGGCAAGGGCCTTGGGAGAAACTTTTTGAGACACCTTAGAAGGACTCGGGTATTGGTTCATGTTGTAGATGC AGCTGCAGAGGACCCTGTGAATGATTACAGAACTGTCAGAGAAGAGTTGAGAATGTACAATCCCGAGTACCTTCAAAGGCCATACCTCGTAGTGCTCAAC AAGATCGATCTTCCTCAGGCAGATGAGAGGCTTCAATACTTGAGTGAAGAAATATCAAGAATCGGTACTGATAAGTTGGAGCCTCATGCTTCTGATGAAG AAGATAATAAAGAGGATAAACAGATAGAGGACTATGCTCCGCCCTTTGCCGTTGTGGGAGTTAGTGTTCTGAAAGGGATCAGAGTAAATGAGATGTTGAA ACAGATTCGAGCTGCCTTACGGAAGTGCAGAGAATCTGTATGA
AA sequence Show only first row Show all	>Lus10024297 pacid=23174988 polypeptide=Lus10024297 locus=Lus10024297.g ID=Lus10024297.BGIv1.0 annot-version=v1.0 MLSMATLPPSSFLRPQCADRTLFLRLHPQQRSNFETLGFFRIECRFARVKQAPAKNPDSLVKEPHKYFDQVIVTVRSGDGGHGAVLKVPNQGLTKAAGRQ DDEKSKSKSKSKSKSNKMAPFKRDFDGSLILPIGGHGGDVVIYADEGKDTLLELHTKGRFSAKRGGNVNSMGVFTSQLRNGLASPSLRIPVPLGTVVKLK RGKLLADLTHPGQEILVARGGQGGISLLDAPEHRKKSLMSLTTNVLRDDSDKVLILGQPGEELSLELILRVVADVGLVGLPNAGKSTLLSAITLARPDIA DYPFTTLMPNLGRLDGDPALGPEMYSSAATLADLPGLIEGAHLGKGLGRNFLRHLRRTRVLVHVVDAAAEDPVNDYRTVREELRMYNPEYLQRPYLVVLN KIDLPQADERLQYLSEEISRIGTDKLEPHASDEEDNKEDKQIEDYAPPFAVVGVSVLKGIRVNEMLKQIRAALRKCRESV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	0	1
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	1.7	0.9567
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	1.7	0.9573
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10041094 [exp]	2.4	0.9567
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10009166 [exp]	5.5	0.9403
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10022659 [exp]	5.9	0.9427
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10039049 [exp]	6.0	0.9353
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10001187 [exp]	6.3	0.9420
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10020325 [exp]	6.5	0.9464
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10001450 [exp]	6.9	0.9362
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10024781 [exp]	7.2	0.9476

Compare expression of checked genes

Lus10024297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.