Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27190 612 / 0 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT2G16430 585 / 0 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT1G56360 518 / 0 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 513 / 0 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT5G34850 467 / 7e-163 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT1G52940 459 / 5e-161 PAP5, ATPAP5 purple acid phosphatase 5 (.1) AT2G18130 446 / 2e-155 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT3G46120 336 / 1e-112 ATPAP19, PAP19 purple acid phosphatase 19 (.1) AT3G52820 241 / 2e-75 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G20500 241 / 4e-75 ATPAP18, PAP18 purple acid phosphatase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006126 [exp] 814 / 0 AT2G27190 681 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10028799 [exp] 593 / 0 AT2G16430 746 / 0.0 purple acid phosphatase 10 (.1.2) Lus10041959 [exp] 592 / 0 AT2G16430 731 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017484 [exp] 591 / 0 AT2G16430 748 / 0.0 purple acid phosphatase 10 (.1.2) Lus10028798 [exp] 554 / 0 AT2G16430 673 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017485 [exp] 541 / 0 AT2G16430 671 / 0.0 purple acid phosphatase 10 (.1.2) Lus10039978 [exp] 474 / 3e-165 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10027710 [exp] 471 / 3e-164 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10008054 [exp] 469 / 2e-163 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G233400 [exp] 662 / 0 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 637 / 0 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.004G160100 [exp] 633 / 0 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.009G121200 [exp] 612 / 0 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.006G063700 [exp] 478 / 3e-167 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G024800 [exp] 467 / 9e-163 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 463 / 3e-161 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.011G138200 [exp] 253 / 5e-80 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 249 / 3e-78 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G176000 [exp] 245 / 4e-75 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10024299 pacid=23175048 polypeptide=Lus10024299 locus=Lus10024299.g ID=Lus10024299.BGIv1.0 annot-version=v1.0 ATGTCCATTGAGGCGCTTACTTATCCTGATTCGGATGATCGAGTGCTAGACTTAAGCTATTATGTTCACATTACACAAGGAGACCATGAAGGGCGGGGGA TTTTGGTATCCTGGATAACTCAGGATGAGCCTGGTTCAAATACAGAGCAGTACTGGGCTGAAGGAAGCAAGCAGAAAAGCCATACTGAAGGGATTCTGGT GACGTACAAGTTTATCAATTATACCTCTGGATACATTCACCACTGCACTATTAAGAACTTGGAGTTTGACACCAAGTATTACTATGAGGTAGGAATTGGT GGAAACTCGACAAGGCAATTCTTTTTTACAACCCCACCGAAACCCGGCCCTGATGTGCCTTATACGTTTGGTCTCATAGGGGATCTTGGTCAAACTCCTG ATTCAAACAGGACAATCGATCATTATCTATCCAATCCTAGGAAACCAAAGACATTGCTGTTTGTTCGTGACCTCTCGTATGCAGATGCTTATCCATTACA TGACAACACAAGGTGGGATACATGGGGACGGTTCAGTGAAAGACTGGTTGCTTATCAACCTGCTATCTGGGCAGCAGGAAATCATGAAATTGATTTTCTC TCTAATAATGGTGAAACTGAGCCCTTCCAACCTTATTTACACCGTTACCATGTCCCATTTAAAGCATCAGGAAGTACATCTCCACTGTGGTACTTCGTTA AGAGGGCTTCAGCATACATTATCGTCCTCTCCAGCTACTCTGCCTTTGGAATGTACACTCCTCAATACAAGTGGCTAGTAGAGGAGCTGCCTAAAGTTAA CAGGAGCGAGACACCATGGCTGATAGTGATAATGCATTCTCCGTTGTACAGTAGCTACGAGCACCATTATATGGAAGGTGAAACCATGCGAGTGATGTTC GAGCAATGGTTTGTAAAATACAAGGTCCATGCTGTCTTTGCCGGACATGTTCATGCTTATGAACGATCCGAACGCATATCGAACATTGCATACAACATAG AAAACGGGTTGTGCACTCCAGTGAAGGATGAATCGGCTCCAGTTTACATTACTATTGGAGATGGAGGAAATCTTGAAGGACTGCTTACAGACAGTATGAT AGAACCACAACCCAGGTACTCAGCTTTCAGAGAACCGAGCTTTGGTCATGGAGTTCTGGACATAAAGAACAGGACACATGCGTATTTTGGGTGGCATCGG AATCAGGATGGATATGCCGTTGAAGCTGATTCATTGTTATTACTCAACAGGCACTGGAAGAACCCCTTGGCCGCCATTTAA
AA sequence Show only first row Show all	>Lus10024299 pacid=23175048 polypeptide=Lus10024299 locus=Lus10024299.g ID=Lus10024299.BGIv1.0 annot-version=v1.0 MSIEALTYPDSDDRVLDLSYYVHITQGDHEGRGILVSWITQDEPGSNTEQYWAEGSKQKSHTEGILVTYKFINYTSGYIHHCTIKNLEFDTKYYYEVGIG GNSTRQFFFTTPPKPGPDVPYTFGLIGDLGQTPDSNRTIDHYLSNPRKPKTLLFVRDLSYADAYPLHDNTRWDTWGRFSERLVAYQPAIWAAGNHEIDFL SNNGETEPFQPYLHRYHVPFKASGSTSPLWYFVKRASAYIIVLSSYSAFGMYTPQYKWLVEELPKVNRSETPWLIVIMHSPLYSSYEHHYMEGETMRVMF EQWFVKYKVHAVFAGHVHAYERSERISNIAYNIENGLCTPVKDESAPVYITIGDGGNLEGLLTDSMIEPQPRYSAFREPSFGHGVLDIKNRTHAYFGWHR NQDGYAVEADSLLLLNRHWKNPLAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27190		ATPAP12	ARABIDOPSIS THALIANA PURPLE AC...		Lus10024299 [exp]	0	1
AT1G18060			unknown protein		Lus10012667 [exp]	5.7	0.7389
AT1G69930		ATGSTU11	glutathione S-transferase TAU ...		Lus10006525 [exp]	18.4	0.5271
AT1G25480			Aluminium activated malate tra...		Lus10035037 [exp]	23.0	0.6672
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020706 [exp]	57.2	0.5809
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039482 [exp]	63.5	0.5905
AT3G46620			zinc finger (C3HC4-type RING f...		Lus10012376 [exp]	68.4	0.6079
AT1G72200			RING/U-box superfamily protein...		Lus10041134 [exp]	75.2	0.5737
AT1G63820			CCT motif family protein (.1)		Lus10024655 [exp]	81.8	0.5767
AT3G08610			unknown protein		Lus10009864 [exp]	83.8	0.5397
					Lus10014735 [exp]	95.5	0.4936

Compare expression of checked genes

Lus10024299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.