Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54140 532 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 527 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 511 / 2e-176 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 488 / 5e-167 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 445 / 4e-151 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G68570 412 / 3e-137 Major facilitator superfamily protein (.1) AT2G26690 404 / 1e-134 Major facilitator superfamily protein (.1) AT3G54450 398 / 1e-132 Major facilitator superfamily protein (.1) AT2G37900 397 / 9e-132 Major facilitator superfamily protein (.1) AT5G46040 394 / 2e-130 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006125 [exp] 1113 / 0 AT3G54140 526 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10035516 [exp] 538 / 0 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10018207 [exp] 527 / 3e-180 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10000670 [exp] 513 / 5e-177 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 513 / 7e-177 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 512 / 9e-177 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 511 / 4e-176 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10021132 [exp] 489 / 7e-168 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10040698 [exp] 469 / 9e-161 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G233500 [exp] 887 / 0 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.002G029200 [exp] 884 / 0 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 536 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 530 / 0 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 526 / 0 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 525 / 0 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 520 / 5e-180 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 497 / 9e-171 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 484 / 8e-166 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.006G092000 [exp] 441 / 8e-149 AT2G37900 777 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10024300 pacid=23175031 polypeptide=Lus10024300 locus=Lus10024300.g ID=Lus10024300.BGIv1.0 annot-version=v1.0 ATGACGAATCTAGTACAAAATGGCTGCATTGATTTTCGAGGAAGAGTTGCGGATAAGCAATTCACTGGAGGATGGAAAAGTGCTCCGTTCATTATAGTGA ACGAAGTAGCAGAGAGGCTTGCGTTTTTCGCCATCGCCGTTAACATGGTGGCCTACTTGGTGCTAGAGATGCGGCAGACGCTTCCCACGGCCGTCACACA CGTCACTAACTGGATCGGAGCTGCCTACGTCCTCACTCTCCTCGGAGCTTTCCTCGCCGACGCATATCTCGGCCGATTCCGTACCATCGTGATTTTCTCC TGCGTTTACTCAGTTGGAATGGTGATGTTAACCTTGTCCGCCTCCGTCGACGGCCTCCGACCACAGCCCTGCAAAATCAAGCCTTGCCCGAAGGCGACCG AGGGACAAACAGCGTTCCTATACTGTGCTCTGGCCTTGATTGCGGTCGGAACTGGAGGGATAAAACCATGCGTATCGTCGTTCGGTGCCGACCAATTCGA CGAGTCGGATCGAGTGGAGGAGAGGAAGAAATACGCCTTCTTTAATTGGTTCTTCTTTGCAATTAACATGGGCGCTCTGTTAGGAATTACGCTGATGGTG TATCTCCAGATTAAGGAAGGTTGGGTTTGGGGCTTCGGAGTTCCCACCGCCGCCATGTTGCTATCTGTCGTGATTCTCGCTGCCGGGTTCCGATTTTACA GGTTCCAAAAGCCGATGGGGAGTCCTTTCACTAGGTTCGTTCAGGTGGTGGTTGCTTCGGTTAGGAATCGCGGTGAAGGCGTGAAGGTGGATGATGAACG GCAACTGTTCGAAGTAATGACTCAAACGTCTGACATCTTTGGCGCCCGTAAGCTTTCCCACACAGCACAGTACCAGTTCCTGGACAAAGCGGCAATCGTA ACTGATACAGAAGGGGACACAACGAATCGTTGGAAACTGTGTACAATAACCCAAGTGGAAGAATTGAAGTCGTTTATCAGAGTGCTTCCCGTTTGGGCAT CAACAATTGCTCTCTCCATCTCCTTCGCTCAGATGTCAACCTTCTTTGTCAGCCAAGCTGCGCTAATGCGCAGAAAACTCGGAGGCGGATCCAACTTTGA GATACCAGCAGGATCTATTCCAGTCTTTGCTGCGATCAACGCGTTGTTCCTTGTCCCCGTATACGAAAAATTGATAGTCCCAAGTCTCCGCAAGAGAACA GGACATCCTAGGGGGCTCACTTCCCTCCAGAGAATGGGTGTAGGGCTCTTCATCTCCATATTTGCGACTCTCGCAGCGGCAATAGTGGAGAAGCGACGAA GGGAGAGCCGAAACAGAGCAGACATGACTGTGTTCTGGCTGTTCCCTCAATTCTTTTTAGTAGGGACTGCGGAGGTGTTCACCTATGTGGGACAGTTGGA GTTCTTTTACGACGAGGCCACAGACGGGACGAGGAGTATTAGCAGTGCTATGTTCCTGGCGGAGATAGGGATAGGGAGCTGGCTGAGCACGACGATCGTG AAGATCATCGAGGCTGCAACGGGCGGAGAAGATAGAGGATGGTTGAGGAATAAGTTGAACGATAGCAAGTTGGATTACTTTTACTGGGTGTTGACGGTGA TAAATGGGGTGAATTTCATGGTGTACTTGGTGGTTGCTTTGCGTTACAAGGGCAGAGTATTGGTTGCAAGTGTGAGAGATGAGGTTGAGGAAGTCCAAGG GAAGATGAATATGGTTGGTGATAAGGAGCTTAAAAGTGTTGTACTCTGA
AA sequence Show only first row Show all	>Lus10024300 pacid=23175031 polypeptide=Lus10024300 locus=Lus10024300.g ID=Lus10024300.BGIv1.0 annot-version=v1.0 MTNLVQNGCIDFRGRVADKQFTGGWKSAPFIIVNEVAERLAFFAIAVNMVAYLVLEMRQTLPTAVTHVTNWIGAAYVLTLLGAFLADAYLGRFRTIVIFS CVYSVGMVMLTLSASVDGLRPQPCKIKPCPKATEGQTAFLYCALALIAVGTGGIKPCVSSFGADQFDESDRVEERKKYAFFNWFFFAINMGALLGITLMV YLQIKEGWVWGFGVPTAAMLLSVVILAAGFRFYRFQKPMGSPFTRFVQVVVASVRNRGEGVKVDDERQLFEVMTQTSDIFGARKLSHTAQYQFLDKAAIV TDTEGDTTNRWKLCTITQVEELKSFIRVLPVWASTIALSISFAQMSTFFVSQAALMRRKLGGGSNFEIPAGSIPVFAAINALFLVPVYEKLIVPSLRKRT GHPRGLTSLQRMGVGLFISIFATLAAAIVEKRRRESRNRADMTVFWLFPQFFLVGTAEVFTYVGQLEFFYDEATDGTRSISSAMFLAEIGIGSWLSTTIV KIIEAATGGEDRGWLRNKLNDSKLDYFYWVLTVINGVNFMVYLVVALRYKGRVLVASVRDEVEEVQGKMNMVGDKELKSVVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024300 [exp]	0	1
AT2G39650			Protein of unknown function (D...		Lus10020938 [exp]	4.5	0.8681
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027846 [exp]	4.6	0.9066
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10003794 [exp]	5.2	0.8688
AT2G25625			unknown protein		Lus10013129 [exp]	6.2	0.8902
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040735 [exp]	9.5	0.8849
AT3G25855			Copper transport protein famil...		Lus10021687 [exp]	12.2	0.8751
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Lus10039511 [exp]	14.3	0.8747
AT2G25625			unknown protein		Lus10008096 [exp]	16.4	0.8327
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10024069 [exp]	16.5	0.8587
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	17.7	0.8621

Compare expression of checked genes

Lus10024300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.