Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75500 514 / 0 WAT1 Walls Are Thin 1 (.1.2) AT3G53210 363 / 1e-123 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 348 / 1e-117 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G30420 201 / 2e-60 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 194 / 7e-58 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 190 / 3e-56 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G45870 189 / 1e-55 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 189 / 1e-55 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 187 / 3e-55 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G45370 181 / 7e-53 nodulin MtN21 /EamA-like transporter family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010647 [exp] 417 / 8e-145 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10027251 [exp] 360 / 8e-122 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10038959 [exp] 357 / 2e-121 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028351 [exp] 291 / 9e-97 AT3G53210 311 / 1e-105 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041801 [exp] 265 / 6e-86 AT1G75500 365 / 6e-126 Walls Are Thin 1 (.1.2) Lus10037284 [exp] 213 / 2e-65 AT5G45370 475 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10035693 [exp] 211 / 4e-64 AT5G45370 502 / 1e-178 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10003738 [exp] 202 / 9e-61 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 196 / 1e-58 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G029100 [exp] 554 / 0 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.005G233600 [exp] 551 / 0 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.007G017800 [exp] 380 / 3e-130 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 370 / 2e-126 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G085100 [exp] 206 / 2e-62 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 201 / 1e-60 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G165600 [exp] 201 / 1e-60 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 200 / 7e-60 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 198 / 4e-59 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 197 / 6e-59 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10024301 pacid=23174885 polypeptide=Lus10024301 locus=Lus10024301.g ID=Lus10024301.BGIv1.0 annot-version=v1.0 ATGGCTGACACCGGTGGAAGCTCCTCTGGAGGCAGAATGTGGTGCTCTGTCCCTGAAAAGATGCAGCTTCACTTGGCCATGTTGGCCTTGCAGTTTGGTT ACGCTGGTTTCCATGTCGTCTCCAGAGCTGCTCTCAACATGGGCATCAGTATGCTTGTCTTCCCTGTTTACAGAAACATCATTGCTCTTCTCCTCCTCCT TCCCTTCGCTTATTTCCTTGAAAAGAAGGAAAGACCAGCCATCACTCTCAATTTCCTTGTCCAGTTCTTCTTCTTGGCTCTTATTGGTATAACTGCAAAC CAAGGATTCTACTTGCTGGGCCTTAACAACACTTCCCCAACCTTCGCTTCCGCAATTCAGAACTCCGTCCCGGCGATCACTTTCCTCATGGCCGCTATCC TCCGGCAAGCGTCCAATTTCCCCCCACCAAATTCATCAATTTTATTTACTCAACCCGTGAAACTAACAACAGAGTTTCCTCTGTCTTTCAGGATAGAGAA AGTGAGATTCGACAGAAAGGACGGGATCGCAAAGGCGGTCGGAACAGCGTGCTGCGTGGCCGGAGCCTCTGTCATCACTCTGTACAAGGGCCCAACGATT TACACCCCAACTCCACAGCTGACGGACATGATAGCTAATTCTGCGTCCTCCTCCTCTGCCGTTCCGAGCTACGTTTCGAAGCTTGGGGACGACGGTAGCG GGACAACAAGCTGGACGTTGGGGTGCCTTTACCTGATCGGACACTGCCTTTGCTGGTCGGGATGGCTGGTCCTGCAGGCCCCGGTGATCAAGAAATACCC GGCGAGGCTGTCGGTGACTTCGTACACATGCTTCTTTGGACTGATTCAGTTCTTAGTTATCGCCGGGTTCATGGAACGCGATGCACAAGCTTGGGTATTC CACTCTGGCGGTGAACTCTTCACCATCCTCTACGCGGGAGTGGTGGCATCTGGGATAGCATTCGCTGTACAGATATGGTGCATCGACAGAGGGGGCCCTG TGTTCGTTGCAGTTTATCAGCCAGTTCAGACCCTTATTGTTGCTATTATGGCCTCCTTTGCTCTCGGAGAGGAGTTCTTCCTTGGCGGGATCATTGGGGC AGTCCTGATCATAATAGGATTGTACCTCGTGCTGTGGGGCAAGAGCCAAGAGAGGAAATTCGCAGCTCTTGACAAGGCAGCCATCCAGTCAGGACAGGAC CAGCAAGGAAGCAACAACAACAGCAACAGGATACACGCTCACGTCAAGTCATCTCTCGCCCAGCCACTGCTCCCTCCTTCCGAAAACGTTTGA
AA sequence Show only first row Show all	>Lus10024301 pacid=23174885 polypeptide=Lus10024301 locus=Lus10024301.g ID=Lus10024301.BGIv1.0 annot-version=v1.0 MADTGGSSSGGRMWCSVPEKMQLHLAMLALQFGYAGFHVVSRAALNMGISMLVFPVYRNIIALLLLLPFAYFLEKKERPAITLNFLVQFFFLALIGITAN QGFYLLGLNNTSPTFASAIQNSVPAITFLMAAILRQASNFPPPNSSILFTQPVKLTTEFPLSFRIEKVRFDRKDGIAKAVGTACCVAGASVITLYKGPTI YTPTPQLTDMIANSASSSSAVPSYVSKLGDDGSGTTSWTLGCLYLIGHCLCWSGWLVLQAPVIKKYPARLSVTSYTCFFGLIQFLVIAGFMERDAQAWVF HSGGELFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLIVAIMASFALGEEFFLGGIIGAVLIIIGLYLVLWGKSQERKFAALDKAAIQSGQD QQGSNNNSNRIHAHVKSSLAQPLLPPSENV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10024301 [exp]	0	1
AT1G35710			Protein kinase family protein ...		Lus10003612 [exp]	3.0	0.9077
AT3G14470			NB-ARC domain-containing disea...		Lus10003571 [exp]	3.9	0.8951
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10008358 [exp]	5.8	0.9064
AT2G02790		IQD29	IQ-domain 29 (.1)		Lus10030784 [exp]	6.7	0.8842
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	6.7	0.8888
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10013968 [exp]	7.7	0.8839
AT5G16720			Protein of unknown function, D...		Lus10004050 [exp]	9.2	0.8808
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10010647 [exp]	10.0	0.8920
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10025928 [exp]	10.1	0.8884
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10042850 [exp]	10.6	0.8739

Compare expression of checked genes

Lus10024301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.