Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39090 495 / 2e-176 EMB3005, RD19A, RD19 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) AT2G21430 488 / 6e-174 Papain family cysteine protease (.1) AT4G16190 481 / 4e-171 Papain family cysteine protease (.1) AT3G54940 394 / 2e-136 Papain family cysteine protease (.2) AT5G60360 209 / 1e-64 SAG2, AALP SENESCENCE ASSOCIATED GENE2, aleurain-like protease (.1.2.3) AT4G35350 206 / 2e-63 XCP1 xylem cysteine peptidase 1 (.1.2) AT3G19400 205 / 6e-63 Cysteine proteinases superfamily protein (.1.2) AT1G20850 205 / 6e-63 XCP2 xylem cysteine peptidase 2 (.1) AT3G19390 205 / 6e-62 Granulin repeat cysteine protease family protein (.1) AT3G45310 201 / 3e-61 Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002103 [exp] 535 / 0 AT4G39090 431 / 5e-153 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10028797 [exp] 479 / 6e-170 AT4G39090 559 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10017487 [exp] 471 / 2e-167 AT4G39090 550 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10038684 [exp] 386 / 3e-133 AT3G54940 499 / 1e-177 Papain family cysteine protease (.2) Lus10037951 [exp] 360 / 4e-121 AT3G54940 451 / 6e-157 Papain family cysteine protease (.2) Lus10017489 [exp] 245 / 1e-80 AT4G39090 314 / 5e-108 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10013204 [exp] 206 / 4e-63 AT1G20850 509 / 0.0 xylem cysteine peptidase 2 (.1) Lus10030722 [exp] 203 / 5e-62 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2) Lus10033428 [exp] 199 / 2e-60 AT3G45310 565 / 0.0 Cysteine proteinases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G028700 [exp] 547 / 0 AT4G39090 536 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.005G234000 [exp] 534 / 0 AT4G39090 501 / 9e-179 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.004G160300 [exp] 504 / 3e-180 AT4G39090 549 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.009G121300 [exp] 495 / 1e-176 AT4G39090 571 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.010G228400 [exp] 375 / 3e-129 AT3G54940 501 / 6e-179 Papain family cysteine protease (.2) Potri.014G024100 [exp] 206 / 4e-62 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.005G256000 [exp] 202 / 4e-62 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.007G047600 [exp] 202 / 8e-62 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.004G207600 [exp] 201 / 1e-61 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.002G005700 [exp] 197 / 5e-60 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10024303 pacid=23174935 polypeptide=Lus10024303 locus=Lus10024303.g ID=Lus10024303.BGIv1.0 annot-version=v1.0 ATGGATCGCTCAACCCAGTTTTCTCTCCTCCTCTCTCTCTCGATCCTCTTCTCCTCCGCCGCTGCCCTCTCCATATCGGAGATGGTTCCGGAGGAGGAGC CTCTGATTCGACAGGTAGTCTCTGGGATCGAGGACCACCTCCTGGACGCCGACGGCCACTTTGCCAGCTTCAAATCCAAGTTTGGCAAGAAGTACGCCAC TCAGGAGGAGCACGATCACCGATTCTCCGTCTTCAAGTCCAACCTCCTCCTCGCCAAGCGCCACCAGCTTATGGATCCCTCAGCCGTCCACGGCGTCACC AAGTTCATGGACTTGACCCCCAAGGAGTTCCGCCGACAGTACCTCGGGATGAGAAAGAAGCTCCAGGTCCCGGCCGACGCTAACAAGGCCCCAGTTCTCC CCACCAAAGATCTACCGACGGACTTCGACTGGCGCGATCATGGAGCTGTTGGAAAAGTCAAAGATCAGGGCTCATGTGGATCTTGCTGGTCGTTCAGCGT GACTGGTGCTCTGGAAGGAGCTCATTTCCTTTCAACTGGAAAGCTTGTGAGCCTTAGCGAGCAGCAGCTCGTGGATTGCGACCACGAGTGCGATCCATCT CAATACGGAGCCTGTGACGCTGGCTGCAACGGTGGATTGATGACCACTGCATACCAGTACACACTGAAGGCCGGTGGAATTGAGCGAGAAGAAGATTATC CTTACACTGGAACTGACGGGACTTGCCAATTCGACAAGAGCAAGATCGCTGCCTCAGTGGCCAACTTCAGCGTTGTTTCCAGCGATGAGGACCAAATTGC TGCTAATTTGGTTAAGAATGGCCCTCTGTCAATTGGCATCAACGCCGTCTTCATGCAAACATACATCGGAGGCGTTTCCTGCCCTTACATATGCCCCAAG AGTCAGGATCATGGCGTGCTGCTGGTGGGGTATGGAGCAGCTGGCTTCGCACCAATCCGGTTGAAGGAAAAGCCATTCTGGATCATCAAGAACTCGTGGG GAGAGAACTGGTCAGAAGAAGGATACTTCAAGGTATGCAAGGCAACTGGCAAGAACCTGTGTGGCATGGACACAATGGTTTCCTCTGTTGCTGCCTTGAC CGTCGGTCATCAGTAG
AA sequence Show only first row Show all	>Lus10024303 pacid=23174935 polypeptide=Lus10024303 locus=Lus10024303.g ID=Lus10024303.BGIv1.0 annot-version=v1.0 MDRSTQFSLLLSLSILFSSAAALSISEMVPEEEPLIRQVVSGIEDHLLDADGHFASFKSKFGKKYATQEEHDHRFSVFKSNLLLAKRHQLMDPSAVHGVT KFMDLTPKEFRRQYLGMRKKLQVPADANKAPVLPTKDLPTDFDWRDHGAVGKVKDQGSCGSCWSFSVTGALEGAHFLSTGKLVSLSEQQLVDCDHECDPS QYGACDAGCNGGLMTTAYQYTLKAGGIEREEDYPYTGTDGTCQFDKSKIAASVANFSVVSSDEDQIAANLVKNGPLSIGINAVFMQTYIGGVSCPYICPK SQDHGVLLVGYGAAGFAPIRLKEKPFWIIKNSWGENWSEEGYFKVCKATGKNLCGMDTMVSSVAALTVGHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10024303 [exp]	0	1
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10002103 [exp]	1.0	0.9318
AT2G20920			Protein of unknown function (D...		Lus10024004 [exp]	1.7	0.9025
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014879 [exp]	3.3	0.8699
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10042274 [exp]	3.5	0.9060
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021574 [exp]	7.7	0.8859
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10033697 [exp]	10.2	0.8749
AT4G38225			unknown protein		Lus10013843 [exp]	11.8	0.8867
AT1G49470			Family of unknown function (DU...		Lus10023842 [exp]	13.0	0.8498
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	13.4	0.8724
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	13.5	0.8648

Compare expression of checked genes

Lus10024303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.