Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39080 1246 / 0 VHA-A3 vacuolar proton ATPase A3 (.1) AT2G21410 1208 / 0 VHA-A2 vacuolar proton ATPase A2 (.1) AT2G28520 1031 / 0 VHA-A1 vacuolar proton ATPase A1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002104 [exp] 1507 / 0 AT4G39080 1226 / 0.0 vacuolar proton ATPase A3 (.1) Lus10017490 [exp] 1212 / 0 AT4G39080 1312 / 0.0 vacuolar proton ATPase A3 (.1) Lus10028796 [exp] 1117 / 0 AT4G39080 1193 / 0.0 vacuolar proton ATPase A3 (.1) Lus10036133 [exp] 1078 / 0 AT2G28520 1360 / 0.0 vacuolar proton ATPase A1 (.1) Lus10018129 [exp] 1077 / 0 AT2G28520 1367 / 0.0 vacuolar proton ATPase A1 (.1) Lus10017488 [exp] 105 / 2e-26 AT4G39080 145 / 2e-41 vacuolar proton ATPase A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G028600 [exp] 1313 / 0 AT2G21410 1187 / 0.0 vacuolar proton ATPase A2 (.1) Potri.005G234100 [exp] 1302 / 0 AT2G21410 1194 / 0.0 vacuolar proton ATPase A2 (.1) Potri.009G121400 [exp] 1241 / 0 AT4G39080 1300 / 0.0 vacuolar proton ATPase A3 (.1) Potri.004G160400 [exp] 1216 / 0 AT4G39080 1245 / 0.0 vacuolar proton ATPase A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01496 [flax] [poplar] V_ATPase_I V-type ATPase 116kDa subunit family
Representative CDS sequence Show only first row Show all	>Lus10024304 pacid=23175015 polypeptide=Lus10024304 locus=Lus10024304.g ID=Lus10024304.BGIv1.0 annot-version=v1.0 ATGGCTGCGGGAATGGATCTGCTGCGGTCAGAACCAATGCAGTTGGTTCAGCTCATCGTTCCAATGGAATCAGCTCATCGGACCATCTCGTATCTTGGCG ATCTCGGACTCTTCCAATTCAAAGACCTTAATCCTGAAAAGAGCCCGTTCCAGAGAACCTATGCTGGGCAAATCAAAAGATGCGCAGAAATGGCACGTAA GCTACGATTCTTCAAGGATCATATGAGGAAAGCTGGCTTGTCACCGTCAACAAGGTCCATAAGCACTGATACTGATCTTGACAGTTTGGAGGTGAAACTT GGAGAACTAGAAGCTGAGTTAATGGAAATCAATGCTAATGATGAAAAGTTGCAGCACACTTGCAATGAACTGTTAGAGTACAAGCTTGTTCTGCAGAAGG CTGGTGAATTTTTTAATTCAGCTCAAAGCACTGCTGCTGCTCATCAGAGAGAATTTGAATCAAATAATGGCGGAGAAGGGTCTATCGACAGTCCATTATT ATTGGAGCAGGAAATGACAACAGATCCATCAAAGCACGTTAAATTGGGGTTTGTTAGTGGTCTTGTTCCTCGAGATAAAGCTATGGCTTTCGAAAGAATT CTTTTCCGTGCAACCAGGGGCAACGTATTTCTAAAGCAATCAGTGGCAGTTAATCCGGTCGTTGATCCAGGATCAGGGGAGAAGGTTGAGAAAAACGTAT TCATAGTTTTCTACTCTGGAGAACGCGCCAAAAACAAAATTCTGAAAATTTGTGAAGCATTTGGAGCTAATCGCTACCCTTTCACAGAAGACCTAGGCAA ACAATTTCAAATGATCAAAGAGGTGTCTGGAAGGCTTTCAGAGCTGAAGACTACCATAGATGTTGGGAGGGCACACCAGAGCAATCTATTACAGAGAATT GGCTTTCAGATTGACCAATGGACTGCATTGGTTAGGAAGGAAAAATCTGTATATCACACATTAAACATGCTGAGTATAGATGTGACAAAGAAGTGCCTTG TTGCTGAAGGTTGGTGCCCTGTTTATGCAACCCTCCAGATCCAGGATACACTGCAGCGCGCTACCCTGGACAGCAACTCACAAATAGGGGCCATCATCCA GGTTTTGCAGACAAAGGAAGCACCGCCTACCTATTTCCGTACAAATAAATTTACATCCGCATTTCAAGAAATCGTTGATGCTTATGGGGTTGCAAAGTAC CGAGAAGTGAATCCTGGTGTTTTTACAATCGTAACATTCCCATTCCTTTTTGCTGTGATGTTTGGTGACTGGGGTCATGGTATTTGCTTATTACTGGCTA CATTGTTTCTTATTGCAATGGAAAAGAAGTATTCGAACCAGAAACTCGGCGACATCCTGGAAATGACATTTGGCGGCCGATATGTTATCATGATGATGTC AATCTTCTCAATATTTACAGGATTGATATATAATGAATTCTTTTCTGTTCCTTTTGAACTTTTTGGTCCATCTGCCTACGCTTGCCGTGACTTATCTTGC AGGGATGCATATACTGTTGGTTTAGTTAAGGTGCGCCCCACTTATCCATTTGGTGTGGATCCCAAGTGGCATGGTACCAGGAGCGAGTTACCTTTTCTCA ACTCATTAAAGATGAAGATGTCAATTTTGTTGGGAGTAGCTCAGATGAATCTTGGTATTATATTGAGCTACTTCAATGCAAAGTTCTTTGCCAATAACCT GAATGTCCGATATCAGTTTATACCCCAGATGATTTTCCTAAACAGCTTATTTGGGTACCTGTCACTCCTGATAATCATTAAATGGTGCACGGGCTCAAAA GCTGATCTGTACCATGTGATGATATATATGTTCCTGAGCCCTATGGATAATCTAGGAGAAAATCAACTCTTTCTTGGACAGAAATATTTGCAGATCCTAC TGCTTGTATTAGCCCTTGTTGCTGTGCCATGGATGTTGTTTCCTAAGCCGTTTCTTCTGAAGAAGCAACACGAGGAAAGGCACCAAGGTCAGTCATATGC CCTACTCGATAACGCGGATGACAACGTTGAAGTGGATTCTCATCAGAAGTCTTCCCATGGTCATGAAGAGTTTGAATTCAGCGAGGTTTTTGTTCATCAG CTTATACACACCATAGAGTTTGTGCTCGGAGCAGTATCCAACACGGCATCATACTTGCGTCTCTGGGCTCTCAGTCTAGCTCACTCTGAGCTATCAAGTG TTTTCTATGACAAGGTTCTGCTTCTGGCTTGGGGGTTCAACAATACTGTCATTCTTATCATTGGCATCATCGTCTTTGTATGTGCAACCGTTGGCGTATT ACTCGTCATGGAAACCCTAAGTGCATTCCTCCACGCGCTGAGGCTTCATTGGGTTGAATTCCAGAACAAGTTCTACGAGGGAGATGGGTACAAATTTGCC CCCTTCTCATTTGCTCTGCTCACTGAAGACGACGAAGGAGCTTAA
AA sequence Show only first row Show all	>Lus10024304 pacid=23175015 polypeptide=Lus10024304 locus=Lus10024304.g ID=Lus10024304.BGIv1.0 annot-version=v1.0 MAAGMDLLRSEPMQLVQLIVPMESAHRTISYLGDLGLFQFKDLNPEKSPFQRTYAGQIKRCAEMARKLRFFKDHMRKAGLSPSTRSISTDTDLDSLEVKL GELEAELMEINANDEKLQHTCNELLEYKLVLQKAGEFFNSAQSTAAAHQREFESNNGGEGSIDSPLLLEQEMTTDPSKHVKLGFVSGLVPRDKAMAFERI LFRATRGNVFLKQSVAVNPVVDPGSGEKVEKNVFIVFYSGERAKNKILKICEAFGANRYPFTEDLGKQFQMIKEVSGRLSELKTTIDVGRAHQSNLLQRI GFQIDQWTALVRKEKSVYHTLNMLSIDVTKKCLVAEGWCPVYATLQIQDTLQRATLDSNSQIGAIIQVLQTKEAPPTYFRTNKFTSAFQEIVDAYGVAKY REVNPGVFTIVTFPFLFAVMFGDWGHGICLLLATLFLIAMEKKYSNQKLGDILEMTFGGRYVIMMMSIFSIFTGLIYNEFFSVPFELFGPSAYACRDLSC RDAYTVGLVKVRPTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNAKFFANNLNVRYQFIPQMIFLNSLFGYLSLLIIIKWCTGSK ADLYHVMIYMFLSPMDNLGENQLFLGQKYLQILLLVLALVAVPWMLFPKPFLLKKQHEERHQGQSYALLDNADDNVEVDSHQKSSHGHEEFEFSEVFVHQ LIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGFNNTVILIIGIIVFVCATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFA PFSFALLTEDDEGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10024304 [exp]	0	1
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037524 [exp]	2.0	0.9395
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10023580 [exp]	3.5	0.9284
AT2G41830			Uncharacterized protein (.1)		Lus10042372 [exp]	4.5	0.8844
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10019170 [exp]	4.9	0.8859
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10012966 [exp]	6.5	0.8939
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10040465 [exp]	7.3	0.9210
AT3G17900			unknown protein		Lus10030797 [exp]	8.0	0.8752
AT5G47490			RGPR-related (.1)		Lus10004721 [exp]	9.5	0.8822
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003525 [exp]	10.2	0.8916
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	10.2	0.9068

Compare expression of checked genes

Lus10024304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.