Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75520 194 / 4e-59 SRS5 SHI-related sequence 5 (.1) AT3G51060 193 / 2e-58 SRS1, STY1 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) AT5G66350 177 / 7e-53 SHI SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) AT1G19790 166 / 2e-48 SRS7 SHI-related sequence 7 (.1.2) AT2G21400 150 / 3e-44 SRS3 SHI-related sequence3 (.1) AT4G36260 151 / 7e-43 SRS2, STY2 STYLISH 2, SHI RELATED SEQUENCE 2, Lateral root primordium (LRP) protein-related (.1) AT2G18120 138 / 7e-39 SRS4 SHI-related sequence 4 (.1) AT5G12330 130 / 6e-35 LRP1 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) AT3G54430 94 / 6e-23 SRS6 SHI-related sequence 6 (.1) AT5G33210 89 / 2e-21 SRS8 SHI-related sequence 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003416 [exp] 346 / 3e-118 AT1G75520 258 / 6e-84 SHI-related sequence 5 (.1) Lus10028352 [exp] 164 / 1e-47 AT3G51060 243 / 4e-78 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Lus10036032 [exp] 140 / 2e-39 AT5G12330 214 / 2e-68 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Lus10041802 [exp] 97 / 4e-23 AT5G66350 150 / 4e-44 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10009697 [exp] 91 / 8e-22 AT5G66350 103 / 5e-27 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10017492 [exp] 75 / 1e-15 AT2G21400 120 / 1e-34 SHI-related sequence3 (.1) Lus10028794 [exp] 69 / 2e-13 AT5G66350 123 / 5e-34 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10041803 [exp] 55 / 2e-09 AT3G51060 88 / 1e-21 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G028500 [exp] 228 / 2e-72 AT1G75520 261 / 1e-85 SHI-related sequence 5 (.1) Potri.005G234200 [exp] 215 / 2e-67 AT1G75520 222 / 2e-70 SHI-related sequence 5 (.1) Potri.005G118200 [exp] 214 / 1e-66 AT3G51060 233 / 6e-74 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.007G017500 [exp] 209 / 5e-65 AT3G51060 238 / 6e-76 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.009G121600 [exp] 164 / 4e-49 AT5G66350 181 / 3e-56 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.004G160600 [exp] 154 / 4e-45 AT5G66350 170 / 4e-52 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.001G276200 [exp] 134 / 4e-36 AT5G12330 226 / 2e-71 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.009G070800 [exp] 134 / 5e-36 AT5G12330 231 / 9e-74 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.003G196100 [exp] 125 / 3e-33 AT5G12330 159 / 8e-47 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.001G027700 [exp] 124 / 8e-33 AT5G12330 157 / 4e-46 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [flax] [poplar] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Lus10024305 pacid=23174922 polypeptide=Lus10024305 locus=Lus10024305.g ID=Lus10024305.BGIv1.0 annot-version=v1.0 ATGGCAGGGTGGTTCTATCTGAGCGGAGGAAGAGAGGCCGCCAGCAGTAAACCGGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGCAGGAGAACAACAGTT TGTATCTATTTCGGAACGAGGAGATCCAAAGCAACAACAACAACCATCATCACCCGCACCACCACCAGGGTAGTAGTACTAGTAGATCAGGGTTTGGGTT TGAGATATGGCCGCAGCAATACTACCACCAACAACAACAGCAGAATCAAGCCAGCATCTACGCTTTAGCTGCTGCAGCTGCTGCTAGTCGGAGCTCTGAT GATTCGTCGAGATCGGGTGGAGGAGGGATCATGATGCGTTCATCAGGAGGAGGAGGATCTTCGGGAGGAATTAACTGCCAGGATTGTGGCAACCAAGCTA AAAAAGACTGCCTACACATGAGGTGCAGGACTTGCTGCAAGAGCCGAGGGTTTAACTGCCAGACTCACGTCAAGTCCACTTGGGTCCCTGCTGCTAAACG CCGTGAGCGTCTTCAGCAGCTCGCCGCCTTGCAACACCAACAACAACAACCACAACAACAAACCTCAGATCATCAACCGCTACAACAACATTTCCGTGGC GAGAATCCGAAACGCCTTCGAGAGAGTAGTACTCGGCTAAGTACACACGTCGCCACCGGCGCCACAGGGTTGGAAGTGGGTGGACACTTTCCAAGCGAGG TGAATTCAGCGGCGGTGTTCAGGTGCGTGAAGGTGAGCTCAGTAGACGACGGCGAGGAACAGCTGGCGTATCAGACCGCAGTTAACATAAGAGGACACGT TTTCAAGGGAATTCTCTACGATCAAGGACCTACTACTACTCATCATCATCATCACCATCCTCATCATCAATCGAGTTCAACTCCATTGCATCTTATGACT GCGGGGACAAGTGGAGGAGGAGGAGGAGGAGCTGGAACAAGCGGCGGTGAAGTAGGGGGTTCAAACAACCCAGTGGGTTCAGGGTCGATGATTGACCCGG CTTCTCTCTACCCGGCTCCGCTAAATGCCTTCATTGCCGGTACGCAATTCTTCCCACCTCCAAGGTCTTGA
AA sequence Show only first row Show all	>Lus10024305 pacid=23174922 polypeptide=Lus10024305 locus=Lus10024305.g ID=Lus10024305.BGIv1.0 annot-version=v1.0 MAGWFYLSGGREAASSKPEEEEEEEEEKQENNSLYLFRNEEIQSNNNNHHHPHHHQGSSTSRSGFGFEIWPQQYYHQQQQQNQASIYALAAAAAASRSSD DSSRSGGGGIMMRSSGGGGSSGGINCQDCGNQAKKDCLHMRCRTCCKSRGFNCQTHVKSTWVPAAKRRERLQQLAALQHQQQQPQQQTSDHQPLQQHFRG ENPKRLRESSTRLSTHVATGATGLEVGGHFPSEVNSAAVFRCVKVSSVDDGEEQLAYQTAVNIRGHVFKGILYDQGPTTTHHHHHHPHHQSSSTPLHLMT AGTSGGGGGGAGTSGGEVGGSNNPVGSGSMIDPASLYPAPLNAFIAGTQFFPPPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10024305 [exp]	0	1
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10003416 [exp]	1.0	0.9424
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Lus10041802 [exp]	4.5	0.8415
					Lus10032104 [exp]	4.9	0.8506
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10028352 [exp]	5.7	0.8091
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012039 [exp]	7.3	0.8488
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Lus10006264 [exp]	11.5	0.7860
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Lus10020584 [exp]	15.1	0.8049
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	20.0	0.7977
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10023461 [exp]	34.3	0.7841
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Lus10009078 [exp]	57.0	0.8032

Compare expression of checked genes

Lus10024305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.