Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62262 309 / 2e-103 SLAH4 SLAC1 homologue 4 (.1) AT1G62280 304 / 4e-101 SLAH1 SLAC1 homologue 1 (.1) AT5G24030 193 / 4e-56 SLAH3 SLAC1 homologue 3 (.1) AT4G27970 189 / 2e-55 SLAH2 SLAC1 homologue 2 (.1) AT1G12480 178 / 5e-51 SLAC1, RCD3, CDI3, OZS1 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015133 [exp] 320 / 7e-107 AT1G62280 387 / 6e-133 SLAC1 homologue 1 (.1) Lus10027553 [exp] 201 / 9e-59 AT5G24030 669 / 0.0 SLAC1 homologue 3 (.1) Lus10039312 [exp] 197 / 1e-57 AT5G24030 670 / 0.0 SLAC1 homologue 3 (.1) Lus10006678 [exp] 171 / 6e-48 AT1G12480 734 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Lus10007023 [exp] 164 / 6e-46 AT1G12480 720 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Lus10031545 [exp] 135 / 1e-38 AT1G62280 160 / 3e-48 SLAC1 homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G114300 [exp] 175 / 3e-51 AT1G12480 432 / 4e-149 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Potri.015G026700 [exp] 143 / 2e-40 AT5G24030 367 / 3e-124 SLAC1 homologue 3 (.1) Potri.002G227800 [exp] 141 / 5e-39 AT1G62280 120 / 7e-31 SLAC1 homologue 1 (.1) Potri.008G084901 [exp] 127 / 8e-36 AT1G62280 117 / 3e-32 SLAC1 homologue 1 (.1) Potri.010G170050 [exp] 126 / 5e-35 AT1G62280 136 / 7e-39 SLAC1 homologue 1 (.1) Potri.015G026801 [exp] 58 / 2e-09 AT5G24030 223 / 4e-68 SLAC1 homologue 3 (.1) Potri.012G035300 [exp] 44 / 5e-05 AT5G24030 172 / 1e-50 SLAC1 homologue 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03595 [flax] [poplar] SLAC1 Voltage-dependent anion channel
Representative CDS sequence Show only first row Show all	>Lus10024306 pacid=23175006 polypeptide=Lus10024306 locus=Lus10024306.g ID=Lus10024306.BGIv1.0 annot-version=v1.0 ATGCAGCCAATAATTCCGTCAAGTCGTTCAGAGATCATTGAGCTCATTATCCAAACCTCAATCTCCCCATCAGTACTACTCCCAGTCCCATCTCCACCTC CTCCACATAACCAATCCGCAATAACTCTACTCTGGAAAAACCTAACCGAACAAGATGGATACCCTCTCCACCACGCCATCCACACCATCCTCCACCCGAC AGGGTTCCTCGTATTCTGGTCCCTATCTCTCTGCCTCCTCTTCCTCCTCTCCCTCATCTACGTCCTACGTTGCTTCTTCTTTTTCAACATGGTCAAGTCA GAATTCTCCAACCACGTGGCGGTCAACTACCTCTTCGCCCCGTGGATCTCCTGGCTCCTCCTCCTCCAATCCGCGCCCTTTCTGCCACCCCACACATTCT CTTACTTACTCCTGTGGTGGATCTTTGCTGCCCCCGTCGTGGCACTCGACGTCAAGATATACGGCCAGTGGTTCACCAAGGGGAAGAGATTCTTGTCCAC CGTGGCCAACCCAACAAGCCAGCTGTCGGTGATCGGGAACCTGGTGGGAGCTCAGGCCGCTGCTAACATGGGTTGGAAGGAGAGCGCTGTCTGCCTCTTC TCATTGGGGATGGTCCATTACTTGGTGCTGTTTGTGACTCGATACCGGCGATGGCACGACGGGAACAGACTTCCGGCCATGTTGCGGCCGGTGTTTTTCT TGTTCTTCGCCGCGCCTAGCGTTGCCAGCCTGGCGTGGAAGTCCATTGTTGGATCTTTCGATACGACGTCGAAGATGCTCTTCTTTGTATCCCTCTTCCT CTTCACATCTCTGGTTTTCAGACCGGCTTTGTTTAAGAGATCCATGAGAAGATTCAGCGTGGCCTGGTGGGCTTACTCGTTCCCCTTGACAGTGCTGGCA CTCGCTTCCGCCGAATACGCAAGGGAAGTGAAAGGAAGTGTTTCCCACGCGCTCATGTTCATTCTGTTGGTCGTCTCCGTTGTCGTCACTCTTGCCCTCT TCGTCTGCACGCTTCTCAACACCAAAATGCTTCTCCCAGATGACGACCCAACCGCCCACCTCATCAGCCGCTACCACTCTCGCCCGTAG
AA sequence Show only first row Show all	>Lus10024306 pacid=23175006 polypeptide=Lus10024306 locus=Lus10024306.g ID=Lus10024306.BGIv1.0 annot-version=v1.0 MQPIIPSSRSEIIELIIQTSISPSVLLPVPSPPPPHNQSAITLLWKNLTEQDGYPLHHAIHTILHPTGFLVFWSLSLCLLFLLSLIYVLRCFFFFNMVKS EFSNHVAVNYLFAPWISWLLLLQSAPFLPPHTFSYLLLWWIFAAPVVALDVKIYGQWFTKGKRFLSTVANPTSQLSVIGNLVGAQAAANMGWKESAVCLF SLGMVHYLVLFVTRYRRWHDGNRLPAMLRPVFFLFFAAPSVASLAWKSIVGSFDTTSKMLFFVSLFLFTSLVFRPALFKRSMRRFSVAWWAYSFPLTVLA LASAEYAREVKGSVSHALMFILLVVSVVVTLALFVCTLLNTKMLLPDDDPTAHLISRYHSRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10024306 [exp]	0	1
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10038651 [exp]	3.0	0.9219
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008918 [exp]	3.2	0.9445
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10003371 [exp]	4.1	0.9525
AT5G67020			unknown protein		Lus10019249 [exp]	4.4	0.9162
					Lus10024932 [exp]	5.7	0.9176
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10031622 [exp]	10.0	0.9367
AT5G59480			Haloacid dehalogenase-like hyd...		Lus10001574 [exp]	11.0	0.9212
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10022724 [exp]	15.5	0.8897
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10019788 [exp]	15.8	0.8885
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10028627 [exp]	16.5	0.9155

Compare expression of checked genes

Lus10024306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.