Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36210 337 / 3e-108 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) AT2G18100 333 / 2e-105 Protein of unknown function (DUF726) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033181 [exp] 748 / 0 AT4G36210 605 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10033916 [exp] 378 / 1e-123 AT2G18100 416 / 5e-138 Protein of unknown function (DUF726) (.1) Lus10010626 [exp] 373 / 1e-122 AT4G36210 376 / 2e-125 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10028363 [exp] 328 / 5e-103 AT4G36210 813 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10041814 [exp] 286 / 4e-87 AT4G36210 752 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016100 [exp] 326 / 3e-102 AT4G36210 657 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05277 [flax] [poplar] DUF726 Protein of unknown function (DUF726)
Representative CDS sequence Show only first row Show all	>Lus10024307 pacid=23174939 polypeptide=Lus10024307 locus=Lus10024307.g ID=Lus10024307.BGIv1.0 annot-version=v1.0 ATGGAGGCAAACATACTAACACCTACCCAGAAATATGCAGGAGCAGCTCTTTTCGCATTGACGCTTCACCAATCTCAAATCCACCAGACTAACCCTTCCA CTCCACCACTCTCCCTTAATCTCGAGCCCATCGGCCATGGCGAAGTCACTTCCACAAAAACTTCTTCCTCTGTCTCTGATAAACCTCAGTTATGGATCCA CCAAGACTCCGGCTTACTTCTCCCCATTTTCAGCTTCCTGGGTGTGGAGCTTCAAGCCTGGGATGGCCTCAAGGAAACAGCTGGATCTTCTGCCCAATTG AGACATCATATTGGATCGCACATAAAATTGCTGTCAGAGGAGAAGGATGGGTCAACAGAGAGACTAGAAAAGGAACAAGCTCTTACAAAGAACGTTGATG CCACTGCTCAGACCATGGATGCCTCCCCTGCTAATTCAAAGAGCGGGAAGATAGCGGTGGGAGTGGAGGGGGCCGGGAATGCCAACGCGGTGGTGAAGAC AGGGATGGTGGCTGGAGCTGCGGCGGACATGGTAATGGAAGAGGTGAAGATGTTGAGTTACCAGAGGAAAATTACGGTGCTTTATGAGCTGCTTTCAGCT TGCCTTGCTGACAGCGTCAAGGAGAACAGCACTTTCTTCAAGCAAAGAGAAGGCTACGATTCTCGACACAGAGTTGCTTTGAGGTTGTTGTCTTCCTGGC TTGCTGTCGAATGGACCGAAATGGAGGCCATGGAAGCAATGGTATGTTGCTGTCTCATGGAGTTACTATCCAAGGCAAGTGAAGGGGACAATCAGCTTTC TGAAGGCACCTGGGACAAATGCAAGCGTGGTGGCATGGTTGGCGCCGCTGCTTTGACTGGCGGAGCTGTTTTAGCCCTCACCGGTGGCCTTGCTGCTCCG GCAATCGCACATGGAGTCGCTGCACTTGCCCCTGCCGTTGGTGGTGCTCTCGCTAGTACTACTGGATCTGTTGCTGTTGCTGCATCATTTGGAGCTGCTG GAATGGGCCTAACGGGGAGCAAAATGGCGAAAAGAGTTGGAGGACTCGAGGAATTTGAGATTGAAGCCCATGGTGAAAGCGCTAACCAAGGGCGACTGGC AGTGGAGATATTCGTCTCTGGATACATTCTTAACGAATCCGATTTCGTAAAGCCATGGGATGGCATTACTGATAACATGGAAAGGTACACATTACGTTGG GAAACCAAGAACTTAATCGAGCTGAGCTCTGCGGTGGAGGACTGGCTTTCTTCAAAGGTTGCAATGGAGATGATGAAACAGGGGGCTATGTTGACTGTAT TGAGCACCTTAGTTGTAGCATTAGCTGTACCGGCAGCGTTGCTTGGAGCTACCGAACTCATCGACACCAAATGGGCAGTCGCTATTAGCAGAGCTGATAA AGCAGGACAACTGCTTGCTGAGGTGTTGATGCAGGGAATGCATGGTAACAGACCTGTGACACTGATAGGCAGCTCACTTGGAGCACGAGCAATTTTCAAG TGTCTGCAGCATTTGGCTGAATCTAAGGGAGACAATGCTGGATTGGTCGAAAGGGTTGTTCTTCTTGGTGCACCAATTCCAATCCAAGGTGAAAAATGGC AGGCTGCCAGAAAGACTTGTGGTGGGTCACTTGTCTGTATGTTATTGGATGGGAGAAAGATGGTGGCTGGAAGATTTGTGAATATATATTCAACTAGTGA TTGGACGTTGGGAGTTACATTCCGTGCAAGTCTGGTTTCCACTGGATTGGCAGGAATTCAGGCCGTTGACGTTCCTGGGATTGAGAACATTGATGCAACG GAGCTAATTTCAACTCACGCCATGTACCTAACAAAGACCAAGGAAATCCTGAACCAGATAGATCTCGAGAGTTGCTACTCTGTTTCCAGTACAACCTTCT CCAAATCCAAAACCAACTAA
AA sequence Show only first row Show all	>Lus10024307 pacid=23174939 polypeptide=Lus10024307 locus=Lus10024307.g ID=Lus10024307.BGIv1.0 annot-version=v1.0 MEANILTPTQKYAGAALFALTLHQSQIHQTNPSTPPLSLNLEPIGHGEVTSTKTSSSVSDKPQLWIHQDSGLLLPIFSFLGVELQAWDGLKETAGSSAQL RHHIGSHIKLLSEEKDGSTERLEKEQALTKNVDATAQTMDASPANSKSGKIAVGVEGAGNANAVVKTGMVAGAAADMVMEEVKMLSYQRKITVLYELLSA CLADSVKENSTFFKQREGYDSRHRVALRLLSSWLAVEWTEMEAMEAMVCCCLMELLSKASEGDNQLSEGTWDKCKRGGMVGAAALTGGAVLALTGGLAAP AIAHGVAALAPAVGGALASTTGSVAVAASFGAAGMGLTGSKMAKRVGGLEEFEIEAHGESANQGRLAVEIFVSGYILNESDFVKPWDGITDNMERYTLRW ETKNLIELSSAVEDWLSSKVAMEMMKQGAMLTVLSTLVVALAVPAALLGATELIDTKWAVAISRADKAGQLLAEVLMQGMHGNRPVTLIGSSLGARAIFK CLQHLAESKGDNAGLVERVVLLGAPIPIQGEKWQAARKTCGGSLVCMLLDGRKMVAGRFVNIYSTSDWTLGVTFRASLVSTGLAGIQAVDVPGIENIDAT ELISTHAMYLTKTKEILNQIDLESCYSVSSTTFSKSKTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36210			Protein of unknown function (D...		Lus10024307 [exp]	0	1
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10042088 [exp]	6.2	0.8769
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10033998 [exp]	9.3	0.8409
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10043387 [exp]	9.8	0.8336
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10004048 [exp]	13.4	0.8440
					Lus10003428 [exp]	15.7	0.8383
AT2G33980		ATNUDT22	nudix hydrolase homolog 22 (.1...		Lus10041965 [exp]	18.7	0.7702
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015284 [exp]	22.6	0.8178
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10010152 [exp]	22.8	0.7978
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10014807 [exp]	23.5	0.8394
AT5G42710			unknown protein		Lus10010806 [exp]	38.7	0.8150

Compare expression of checked genes

Lus10024307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.