Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20300 419 / 7e-144 Protein of unknown function (DUF3537) (.1) AT4G22270 412 / 1e-141 ATMRB1 ARABIDOPSIS MEMBRANE RELATED BIGGER1, Protein of unknown function (DUF3537) (.1) AT4G03820 388 / 4e-132 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT1G50630 387 / 2e-131 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT1G67570 201 / 3e-59 Protein of unknown function (DUF3537) (.1) AT2G21080 190 / 2e-55 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033919 [exp] 752 / 0 AT3G20300 476 / 2e-166 Protein of unknown function (DUF3537) (.1) Lus10009722 [exp] 417 / 2e-140 AT3G20300 626 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10002334 [exp] 407 / 2e-139 AT3G20300 616 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10036448 [exp] 224 / 2e-68 AT2G21080 450 / 5e-157 unknown protein Lus10011371 [exp] 196 / 3e-57 AT1G67570 529 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10043011 [exp] 171 / 4e-48 AT1G67570 404 / 2e-138 Protein of unknown function (DUF3537) (.1) Lus10006430 [exp] 158 / 2e-43 AT1G67570 435 / 3e-150 Protein of unknown function (DUF3537) (.1) Lus10032513 [exp] 142 / 6e-38 AT1G67570 319 / 4e-106 Protein of unknown function (DUF3537) (.1) Lus10032512 [exp] 57 / 5e-10 AT1G67570 94 / 5e-24 Protein of unknown function (DUF3537) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356200 [exp] 423 / 8e-146 AT3G20300 613 / 0.0 Protein of unknown function (DUF3537) (.1) Potri.006G279200 [exp] 239 / 7e-74 AT2G21080 453 / 6e-158 unknown protein Potri.018G002700 [exp] 220 / 1e-66 AT2G21080 447 / 9e-156 unknown protein Potri.012G094700 [exp] 196 / 8e-58 AT1G67570 417 / 2e-143 Protein of unknown function (DUF3537) (.1) Potri.015G092200 [exp] 186 / 6e-54 AT1G67570 405 / 8e-139 Protein of unknown function (DUF3537) (.1) Potri.008G178100 [exp] 186 / 2e-53 AT1G67570 491 / 3e-172 Protein of unknown function (DUF3537) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12056 [flax] [poplar] DUF3537 Protein of unknown function (DUF3537)
Representative CDS sequence Show only first row Show all	>Lus10024308 pacid=23175025 polypeptide=Lus10024308 locus=Lus10024308.g ID=Lus10024308.BGIv1.0 annot-version=v1.0 ATGGAAAATGATGCAGCCGCTGCTTCCCTCATCCTTATACCCAAAGCTATTAAATTCCCCGAGGACGGAGGAGGAGGAGAAGAAGCGATCGAATTCAAGA GCCTGAGATTGTGCCTAAACTGCCTCTGTCTCAACGATCAATCCAACATATGGGCTGCCAGTTTGTCATGGTCGGTCTTCTTCATCCTCGCCTTTGGCGT CCCCACAGTTTCCCACTTCCTTTTCCTGTGCGCTGATTGTGATCAAAAGCATCAGAGACCTTACGACACCGTCGTCCAGCTCTCTCTTTCTGTTTGCGCT GTCATTTCTTTTCTCTGCCTCTCTCATTGGTCTCGCAAGTATGGCTTCAGGAGGTTTCTCTTTCTCGACAAATTGGATGGCGAGAGTCTGCGGATTCGAC GAGGATATCAGCAGGAGCTCAAGCGATCAATGGCGCTTCTCTGTACATTTGTGCTTCCCTGTTTCGCGGTGGAGTCTGCATATAGAATATGGTGGTACGC TACAGGAGCCTTTGAGATACCCTATTTTGGGAACATGTATGCCAGCGATACCATCTTTTGCGTGTTGCAGCTGGCCTCCTGGGTTTACCGCATCTCCATT TTCATCCTGGTCTGCATTCTCTACCGTCTCATCTGCCATCTCCAAATACTCAGACAGCAGGAGTTTGCAGACTTGTTTCAGAGTGAAACGGAAGTTGGTT CCATCTTGAAAGAGCATCTTAGAACCAGGAGGAACACCAGAAGGAATCTCAGGATTATCAGCCATCGGTTCCGAAGGTTCATCCTATTGTCTCTGCTCTT GGTCACCGCAAGTCAATTGATGTGCTTGCTCGTCACTACTAGGTCCACTGCTACTAACAACATCTACGAGGCTGGAGAGCTCCTGCTCTGCTCTATAAAT CTGGTGATAGGACTATTCATATGCCTGAGAAGTGCGACAAAGATCACCCATAAAGCACAGGCCATAACAAGTCTTGCCGCAAAGTGGCATGTCTGTGCCA CGATCAACTCATCATATGACCATGACATGGGCGATGGTGAGAGTCCAACTAGCCAACCCATTGCTGATTGTAATCAGGTTCACCCCATCAATATAAAGTG GGTTCTGGACGAAGAGGAGGATGGGGAAGAAGAAGATGAAGAAGAAGATGATGGAAACTCCAACAGCTCGAATATGGTGCCCATATTTGCACATACGATG TCTTTCCAAAAGAGACAGGCACTAGTGACGTACCTAGAGAACAACAAGGCAGGAATGACGGTGTTCGGATTTATGATGGATAGGACATGGCTTCACACCA TATTTGGGGTTGAATTAGCCCTTCTCTTATGGCTCCTTAATAAGACTATAGTGAGTTGGACTTGA
AA sequence Show only first row Show all	>Lus10024308 pacid=23175025 polypeptide=Lus10024308 locus=Lus10024308.g ID=Lus10024308.BGIv1.0 annot-version=v1.0 MENDAAAASLILIPKAIKFPEDGGGGEEAIEFKSLRLCLNCLCLNDQSNIWAASLSWSVFFILAFGVPTVSHFLFLCADCDQKHQRPYDTVVQLSLSVCA VISFLCLSHWSRKYGFRRFLFLDKLDGESLRIRRGYQQELKRSMALLCTFVLPCFAVESAYRIWWYATGAFEIPYFGNMYASDTIFCVLQLASWVYRISI FILVCILYRLICHLQILRQQEFADLFQSETEVGSILKEHLRTRRNTRRNLRIISHRFRRFILLSLLLVTASQLMCLLVTTRSTATNNIYEAGELLLCSIN LVIGLFICLRSATKITHKAQAITSLAAKWHVCATINSSYDHDMGDGESPTSQPIADCNQVHPINIKWVLDEEEDGEEEDEEEDDGNSNSSNMVPIFAHTM SFQKRQALVTYLENNKAGMTVFGFMMDRTWLHTIFGVELALLLWLLNKTIVSWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	0	1
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	2.4	0.8923
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	3.0	0.8932
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10005703 [exp]	3.5	0.8816
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	5.2	0.8825
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031262 [exp]	5.9	0.8680
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	5.9	0.8777
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Lus10027436 [exp]	6.0	0.8683
AT3G26000			Ribonuclease inhibitor (.1)		Lus10006438 [exp]	6.7	0.8504
AT5G43100			Eukaryotic aspartyl protease f...		Lus10018709 [exp]	6.7	0.8641
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10010937 [exp]	6.9	0.8582

Compare expression of checked genes

Lus10024308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.