Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42480 725 / 0 ARC6 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) AT3G19180 74 / 3e-13 ATCDP1, ARC6H, PARC6 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033922 [exp] 1288 / 0 AT5G42480 827 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Lus10042298 [exp] 107 / 1e-23 AT3G19180 635 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Lus10026359 [exp] 67 / 4e-11 AT3G19180 752 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235000 [exp] 867 / 0 AT5G42480 884 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Potri.002G027501 [exp] 242 / 5e-74 AT5G42480 283 / 1e-89 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Potri.015G028101 [exp] 86 / 4e-17 AT3G19180 857 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.012G035900 [exp] 81 / 1e-15 AT3G19180 843 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.012G036100 [exp] 58 / 5e-09 AT3G19180 297 / 4e-96 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024309 pacid=23175051 polypeptide=Lus10024309 locus=Lus10024309.g ID=Lus10024309.BGIv1.0 annot-version=v1.0 ATGGCGGTTTTTAAGCATATCGGCATTAGCACCTGCGCTCCGTCTCCAGGACTTATCGGCTCTTCCATATCGCCTCCTTTATCTCGCCGGCAGAACAAGC TCCCTATGTTCTCGACCGTCACCTGCTCCTCCAGCAAATGGGCCGAACGCCTCCTCGGCGACTTTCAGTTCTTCAGTCCCGCCGCCGACTCTTCTTCCGA ACTTCTTAACTCCCTCTCCACCACAACCACCTCCACTCTCGCTCCTCTTCCTCAGCATCGTCCTCCGCCTCCCGAGCGATTCGTCTCCATTCCTCTTGAT TTCTATAAGGTTTTGGGAGCTGAGACTCATTTCCTGGGAGATGGAATCAGGAGAGCATACCAGGATAGGGTTTCCAAACCCCCTGCCTACGGCTTCAGTC AAGATGCTTTGATCAGCCGTGGGCAGATTCTTCAAGCAGCGTGTGACACCCTAGCCAATTTCAGTTCCAGAAGAGAATACAATCATGGACTTGTTGACGA CGAGGAGGATACTATCCTTACTCAAGTCCCCTGGGACAATGTTCCTGGGGCTCTCTGTGTATTGCAAGAAGCAGGGGAGACCGAGGGTGTTCTTGAAATC GGGGAAGCTTTGCTTAAAGAAAGATTGGGCAAGGCCTTCAAGCAAGATGTTGTCTTGGTCATGGCTCTTGCCTGTGTTGATATGTCGAGGAACGGTATGG CATTGGATCCACCCGACTTTATTAGAGGGTGTGATATGCTGGAGAAGGCATTGAAGTTGTTGCAGGAGGAAGGGGCAAGCAGCCTTGCACCGGATTTACA GGCACAAATTGATGAGACACTTGAGGAGATCACTCCTCGTTATGTTCTAGAACTTCTAGCCTTGCCCCTGGAGGAAGAATTTCGGATGAAAAGAGAAGAA GGTCTTCAAGGAGTCCGCAACATATTGTGGGCTGTTGGAGGAGGTGGAGCATCACCTCTTTCCGGTGGATTCACGAGGGAAGATTTCATGAAAGAGGCCT TCTTGCGTATGACATCTTCTGAACAGGTTGATCTATTTGTAGCCACTCCTCCTAACATTCCACCTCAAAATTTTGAAGTATATGGAGTTGCACTTGCTCT TATTGCCCAAGCTTTTATGGGTAAAAAGCCTCAACATGTCCCTTACGCTGATAATCTATTTGAGCAACTCCAACAGACCAAAGCAAGTAGTCTGAAAGAA GACTGTGAGACTGAGCATTCCCTGGGAAGAGGTCTCTGTTCGCTACTTTTGGGGGAGCTTGATGATTGTCATGCATGGTTAGGCTTAGAACAAGAAAACT CGCATTACAGAAACCCTGCAGTTGTACAGTTTGTCTTGGAAAATTCAGATGAGGACGATGAAGACAATCTCCGTGGACTTTGTAAGTTGCTGGAGACCTG GTTAATGGATGTAGTTTTCCCAAGATTTAGAGATACCAAGGATCTGGAGTTCAGGCTCGGGGACTACTATGATGATCCTGCTGTCTTGAGCTACTTAGAA AGCCGGGGAGGTGCTGGTCGATCACCTCTTGCTGCAGCTGCAGCTATAGTAAGGATAGGGGCTGAGGCATTGCAGAAGGTGTTTCCCTTGGGCCAAGAGG GGAAAATAAATGGTTATCGAGAGAATGGTGTGATCAACTATTCTGTTGCTGCAGTCCCAGAGAGCAATACGATTATTGAAAAGCTTGATGTGGGCAAGAA TGACAGCATGGCTGGAGTATCTGGAAAGGGCTTTTCTGATGAAATGCCAGAAACGATAACTGAAAAGATCAAGGACGCTAGTGTTAAAATCATGAGTGCT GGAGTTGCAATTGGAGTTTTAACTTTAGTTGGATTGAAGTATATGCCATCTAGACATCTCTTCTTGGGCCAAGGAAAGATTGATCAAGCAACTGTACCTG ACACAACTGCTGAGGGCGAAAACTCTCTCGATGAACTGTCAAGAATGAATTTAAGTGTAGCAGAGGGTATAATCCGCGACTGGCAGAGTATCAAATCTCA GGCATTTGGATCTGATCATTGTCTAGGAAAATTGACAGAGGTCTTGGATGGCCAGATGTTGAAGATCTGGACAGATCGTGCTGCTGAGACTGCGAAGCTC GGCTGGGTATATGACTTCTGCTTACTGGACTTAACCATCAACGATGTAACAATGTCTTCAGATGGGCAGCAAGCTGTAGTGGAAGCAACTATAAAAGAAT CAATCACCTTAACCGATGCTGTCCATCCAAAACAGGACCCGAACACTACAACCTACACAACTAGATATGAGCTTTCAGCCTCAGGTTCAGGATGGAGAAT CACCGAAGGATCATTGTTGGTGTAG
AA sequence Show only first row Show all	>Lus10024309 pacid=23175051 polypeptide=Lus10024309 locus=Lus10024309.g ID=Lus10024309.BGIv1.0 annot-version=v1.0 MAVFKHIGISTCAPSPGLIGSSISPPLSRRQNKLPMFSTVTCSSSKWAERLLGDFQFFSPAADSSSELLNSLSTTTTSTLAPLPQHRPPPPERFVSIPLD FYKVLGAETHFLGDGIRRAYQDRVSKPPAYGFSQDALISRGQILQAACDTLANFSSRREYNHGLVDDEEDTILTQVPWDNVPGALCVLQEAGETEGVLEI GEALLKERLGKAFKQDVVLVMALACVDMSRNGMALDPPDFIRGCDMLEKALKLLQEEGASSLAPDLQAQIDETLEEITPRYVLELLALPLEEEFRMKREE GLQGVRNILWAVGGGGASPLSGGFTREDFMKEAFLRMTSSEQVDLFVATPPNIPPQNFEVYGVALALIAQAFMGKKPQHVPYADNLFEQLQQTKASSLKE DCETEHSLGRGLCSLLLGELDDCHAWLGLEQENSHYRNPAVVQFVLENSDEDDEDNLRGLCKLLETWLMDVVFPRFRDTKDLEFRLGDYYDDPAVLSYLE SRGGAGRSPLAAAAAIVRIGAEALQKVFPLGQEGKINGYRENGVINYSVAAVPESNTIIEKLDVGKNDSMAGVSGKGFSDEMPETITEKIKDASVKIMSA GVAIGVLTLVGLKYMPSRHLFLGQGKIDQATVPDTTAEGENSLDELSRMNLSVAEGIIRDWQSIKSQAFGSDHCLGKLTEVLDGQMLKIWTDRAAETAKL GWVYDFCLLDLTINDVTMSSDGQQAVVEATIKESITLTDAVHPKQDPNTTTYTTRYELSASGSGWRITEGSLLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Lus10024309 [exp]	0	1
AT3G57000			nucleolar essential protein-re...		Lus10035220 [exp]	4.2	0.8522
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10043188 [exp]	5.0	0.8515
AT5G46070			Guanylate-binding family prote...		Lus10025456 [exp]	5.7	0.8774
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Lus10033922 [exp]	7.4	0.8388
AT1G04210			Leucine-rich repeat protein ki...		Lus10021898 [exp]	8.1	0.8464
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	9.8	0.8517
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	10.0	0.8392
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10020189 [exp]	10.5	0.8647
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	10.6	0.8437
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	18.7	0.8398

Compare expression of checked genes

Lus10024309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.