Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24160 661 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G64670 59 / 2e-09 CED1, BDG1 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1, BODYGUARD1, alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 59 / 2e-09 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G41900 54 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 52 / 3e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G18360 50 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 49 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1) AT5G19850 49 / 4e-06 alpha/beta-Hydrolases superfamily protein (.1) AT1G77420 49 / 5e-06 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 48 / 5e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033927 [exp] 215 / 3e-68 AT4G24160 191 / 8e-60 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028315 [exp] 59 / 3e-09 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10023147 [exp] 55 / 5e-08 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 54 / 8e-08 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 51 / 6e-07 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10002142 [exp] 50 / 1e-06 AT4G12830 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10003969 [exp] 50 / 2e-06 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041763 [exp] 49 / 4e-06 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031137 [exp] 49 / 8e-06 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027300 [exp] 666 / 0 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G235200 [exp] 665 / 0 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 58 / 6e-09 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G121000 [exp] 55 / 4e-08 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G062700 [exp] 51 / 4e-07 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 50 / 2e-06 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G147400 [exp] 50 / 2e-06 AT4G24140 615 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G083400 [exp] 50 / 3e-06 AT4G24140 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G158800 [exp] 47 / 1e-05 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G168600 [exp] 47 / 1e-05 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10024310 pacid=23175030 polypeptide=Lus10024310 locus=Lus10024310.g ID=Lus10024310.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAGCTTAGATCCTCTTCTTCTCCAGCAGCCGCCACCGCCGCACAGACTCCTTCTGCGACGGCTTCATCGTGGGCGAAGACTAGATCCTTGT GGCCTTCTGTCCTCCGCTGGATCCCAACTTCCACAGATCACATCATCGCCGCCGAAAAACGCCTCCTTTCCGTCATCAAGACTCCATACGTTCAAGAGAG AGTTAATATAGGTTCAGGGCCGCCGGGTTCTAAGGTCAGGTGGTTTCGCTCATCTAGTAATGAACCCAGATTCATCAATACAGTTACTTTTGAAAAGAAA CAAGGTGCTCCCACGCTAGTAATGGTCCATGGTTATGGTGCTTCCCAAGGCTTCTTCTTTAGGAATTTTGATGCCCTTGCTGCTAAATTCAACGTTATTG CTATCGATCAACTTGGATGGGGTGGATCAAGTCGTCCTGATTTTACCTGTAAGAGTACTGAAGAAACGGAGGCATGGTTTATCGACTCTTTTGAGGAGTG GCGAAAAGCTAAGAACCTAGATAACTTCATCTTGCTTGGGCATTCTTTTGGGGGGTATGTAGCTGCTAAGTATGCACTCAAGCATCCTGAGCATGTTCAG CACTTGGTTTTGGTGGGATCAGCTGGATTTTCATCAGAAGCTGATGCAAAGTCCGAGTGGCTTACCCGGTTCAGGACAACATGGAAAGGTGCACTCCTGA ATCACTTATGGGAGTCTAACTTTACCCCCCAAAAAATGGTTAGAGGTTTAGGTCCTTGGGGTCCAAATATTGTTCAACGATATACATCTGCTCGATTTGG TGCATATGCAAGTGGAGAGATGTTGACTGAGACCGAGTCCAAGTTGCTAACAGACTATGTATACCATACTTTGGCAGCCAAGGCTAGTGGCGAGTTGTGC CTCAAGTACATATTTTCCTTTGGAGCTTACGCTCGCAAGCCCCTGTTACAAAGGGCATCAGAGTGGAAAGTGCCTACGACTTTCATATACGGAGTGGAGG ATTGGATGAATTACAAAGGTGCTCAAGAAGCTCGAAAGGATATGAATGTCCCCTGTGAAATCATTAGGGTTCCTCGGGGAGGGCACTTCGTGTTCATAGA CAACCCAGTTGGGTTCCATTCAGCAGTGTTGTACGCCTGCAGACGGTTTCTCTCGAGTAACCCAGATAATGAATCCCTTCCAGCAGAACTTTCCTTGGCA TGA
AA sequence Show only first row Show all	>Lus10024310 pacid=23175030 polypeptide=Lus10024310 locus=Lus10024310.g ID=Lus10024310.BGIv1.0 annot-version=v1.0 MAEELRSSSSPAAATAAQTPSATASSWAKTRSLWPSVLRWIPTSTDHIIAAEKRLLSVIKTPYVQERVNIGSGPPGSKVRWFRSSSNEPRFINTVTFEKK QGAPTLVMVHGYGASQGFFFRNFDALAAKFNVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLDNFILLGHSFGGYVAAKYALKHPEHVQ HLVLVGSAGFSSEADAKSEWLTRFRTTWKGALLNHLWESNFTPQKMVRGLGPWGPNIVQRYTSARFGAYASGEMLTETESKLLTDYVYHTLAAKASGELC LKYIFSFGAYARKPLLQRASEWKVPTTFIYGVEDWMNYKGAQEARKDMNVPCEIIRVPRGGHFVFIDNPVGFHSAVLYACRRFLSSNPDNESLPAELSLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	0	1
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	1.0	0.9385
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10018408 [exp]	2.8	0.8647
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10035262 [exp]	3.5	0.8740
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10024512 [exp]	3.5	0.8694
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	4.5	0.8966
AT1G29690		CAD1	constitutively activated cell ...		Lus10029279 [exp]	5.1	0.8160
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10040620 [exp]	5.2	0.8534
AT1G30755			Protein of unknown function (D...		Lus10017260 [exp]	5.5	0.8721
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10021565 [exp]	5.5	0.8532
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	6.5	0.8660

Compare expression of checked genes

Lus10024310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.