Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75620 651 / 0 glyoxal oxidase-related protein (.1) AT1G19900 640 / 0 glyoxal oxidase-related protein (.1) AT3G57620 537 / 0 glyoxal oxidase-related protein (.1) AT1G14430 531 / 0 glyoxal oxidase-related protein (.1) AT1G67290 413 / 2e-138 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT5G19580 407 / 2e-136 glyoxal oxidase-related protein (.1) AT3G53950 398 / 2e-133 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012387 [exp] 533 / 0 AT1G19900 352 / 2e-119 glyoxal oxidase-related protein (.1) Lus10015949 [exp] 524 / 0 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10030798 [exp] 509 / 3e-176 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1) Lus10024342 [exp] 410 / 7e-138 AT3G53950 841 / 0.0 glyoxal oxidase-related protein (.1) Lus10034959 [exp] 399 / 2e-132 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10011109 [exp] 394 / 8e-132 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10043230 [exp] 392 / 2e-129 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10011111 [exp] 388 / 9e-129 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 390 / 3e-128 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027000 [exp] 695 / 0 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 669 / 0 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 646 / 0 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 539 / 0 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 538 / 0 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 518 / 4e-180 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 480 / 2e-165 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.006G160800 [exp] 417 / 5e-140 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 407 / 4e-136 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 384 / 6e-128 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF09118 [flax] [poplar] DUF1929 Domain of unknown function (DUF1929) CL0159 [flax] [poplar] PF07250 [flax] [poplar] Glyoxal_oxid_N Glyoxal oxidase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10024312 pacid=23174948 polypeptide=Lus10024312 locus=Lus10024312.g ID=Lus10024312.BGIv1.0 annot-version=v1.0 ATGTCTAAATTAATGTTGGCTACCATTTCTCTTCTCCTCCTCATCTTTTCCGCTGCCACAACCTCCGGCAGCGTAGGTAGCTGGGAATTTCTTCAAAAAA GTATAGGCATGCCGGCAATGCACATGCAGCTCCTCTCCAACGACCGCGTCGTCATCTTCGACCGTACCGATTTCGGCCACTCCAACCTCTCCTTACCCCA AGGAAAATGCCGTCACGATCCAACTGAGCGAATGGTCCAAACCGACTGCACCGCCCATTCCGTCGAGTACGACGCCCCATCCAACTCCTTCCGCCCCCTC ACCGTCCAGACTGACGTCTGCGACGGCGAGCGCCGAGCAAGAGAAATCCGTCCCTGCAGTAATGATACCTGTGACTGGATAGAATTCGACAACAGCCTAT CAGCTAGGCGATGGTATTCCACCAATCAACTGCTGCCAGATGGAAGGCAGATAATCGTCGGAGGTAGAAGGCAATTTAACTATGAGTTTTACCCCAAAAA CGATGCCGCACCAGGAGTGTACAGCCTTCCTTTCTTGGTTCAGACCAACGACCCGCTAGTGGAGAACAATCTTTACCCCTTTGTCTTCCTAAACGTGGAC GGGAATCTATTCATCTTCGCCAACAATCGGGCCATACTTTACAATTTGACCAGCCACTCGGTCGTCAAAAGCTACCCCGTGATTCCTGGAGGGGACCCAC GGAGCTATCCGAGCACCGGATCTGCTGTCTTGCTCCCACTCAAGCTTACCATGAAACCTGCTGCTGACGTGGTCGACGCTGAGGTTTTGGTCTGCGGCGG CGCCCCCAAGGGCTCCTATACCACTGCCACAAAAGGGAATTTCGTCACGGCTTTGGACACTTGCGCTCGGATCAAGATAACCGACCCGAACCCGGCGTGG ATCATAGAGAAGATGCCCAAGGAGAGAGTTATGGGAGATATGGTCTCGCTTCCCAACGGGAATGTCTTGATTATAAACGGTGCTAGTTCGGGTACAGCCG GGTGGGAGTTAGGCCGGGATCCGGTTTTAAATCCGGTTCTTTACCTCCCGGAGAATCCAGTCGGGTCTAGGTTCGAGGTCCAGAATCCGACCACAATACC CAGGATGTACCATTCGTCAGCGGTTCTCCTCCGCGACGGAAGAGTTCTAGTCGGTGGGAGCAACCCCCACGTATATTACAATTTCACCGGGGTGATGTTC CCAACGGATCTAAGCCTGGAGGCGTTCTCCCCGGGGTACTTGGCAGGATCGTTTGACGGAAAGAGACCGGAGATCCTATCTCCGTCGTCGGGAGTTGGAG TGTCGTACGGGAAGAAATTTGGAGTTCAATTCAAGGTGGCGGCGGGGACGGCGGAGAATGGGGTGATTGTGACGATGGTGGCGCCGCCGTTCACGACGCA CTCGTTCTCTATGAACCAGAGGGTGTTGGTGCTAGGGAGAGAGAAATTGAGGAGCATGGGACCGGCGAGTTACCAAGTGACGGTCAGCTGCCCAACGTCG CCGAATTTGGCGCCGCCAGGGTATTATATGTTGTTTGTGGTGAACCAGGAAATTCCCAGTCCAGGGATTTGGGTCAAACTCGGTTGA
AA sequence Show only first row Show all	>Lus10024312 pacid=23174948 polypeptide=Lus10024312 locus=Lus10024312.g ID=Lus10024312.BGIv1.0 annot-version=v1.0 MSKLMLATISLLLLIFSAATTSGSVGSWEFLQKSIGMPAMHMQLLSNDRVVIFDRTDFGHSNLSLPQGKCRHDPTERMVQTDCTAHSVEYDAPSNSFRPL TVQTDVCDGERRAREIRPCSNDTCDWIEFDNSLSARRWYSTNQLLPDGRQIIVGGRRQFNYEFYPKNDAAPGVYSLPFLVQTNDPLVENNLYPFVFLNVD GNLFIFANNRAILYNLTSHSVVKSYPVIPGGDPRSYPSTGSAVLLPLKLTMKPAADVVDAEVLVCGGAPKGSYTTATKGNFVTALDTCARIKITDPNPAW IIEKMPKERVMGDMVSLPNGNVLIINGASSGTAGWELGRDPVLNPVLYLPENPVGSRFEVQNPTTIPRMYHSSAVLLRDGRVLVGGSNPHVYYNFTGVMF PTDLSLEAFSPGYLAGSFDGKRPEILSPSSGVGVSYGKKFGVQFKVAAGTAENGVIVTMVAPPFTTHSFSMNQRVLVLGREKLRSMGPASYQVTVSCPTS PNLAPPGYYMLFVVNQEIPSPGIWVKLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	0	1
AT1G69630			F-box/RNI-like superfamily pro...		Lus10023042 [exp]	1.7	0.9309
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10000502 [exp]	2.0	0.9546
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	2.4	0.9593
					Lus10016420 [exp]	3.5	0.9242
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000072 [exp]	4.0	0.9309
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021719 [exp]	4.7	0.9092
AT1G19900			glyoxal oxidase-related protei...		Lus10012387 [exp]	5.8	0.8986
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10029839 [exp]	6.0	0.9125
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002610 [exp]	6.4	0.8248
					Lus10004679 [exp]	6.5	0.9060

Compare expression of checked genes

Lus10024312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.