Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42520 412 / 6e-145 BBR_BPC BPC6, BBR/BPC6, ATBPC6 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) AT2G21240 210 / 3e-66 BBR_BPC BPC4, BBR/BPC4, ATBPC4 basic pentacysteine 4 (.1.2) AT4G38910 197 / 1e-61 BBR_BPC BPC5, BBR/BPC5, ATBPC5 basic pentacysteine 5 (.1.2) AT2G35550 156 / 3e-46 BBR_BPC BPC7, BBR/BPC7, ATBPC7 basic pentacysteine 7 (.1.2.3.4) AT1G68120 150 / 2e-43 BBR_BPC BPC3, BBR/BPC3, ATBPC3 basic pentacysteine 3 (.1) AT1G14685 146 / 8e-42 BBR_BPC BBR/BPC2, ATBPC2, BPC2 basic pentacysteine 2 (.1.2.3) AT2G01930 142 / 4e-40 BBR_BPC BPC1, BBR/BPC1, ATBPC1 basic pentacysteine1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012389 [exp] 600 / 0 AT5G42520 432 / 1e-152 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10042056 [exp] 273 / 6e-91 AT2G21240 350 / 1e-121 basic pentacysteine 4 (.1.2) Lus10018060 [exp] 271 / 9e-90 AT2G21240 355 / 1e-123 basic pentacysteine 4 (.1.2) Lus10031078 [exp] 246 / 5e-80 AT2G21240 323 / 5e-111 basic pentacysteine 4 (.1.2) Lus10035462 [exp] 243 / 9e-77 AT2G21240 325 / 2e-109 basic pentacysteine 4 (.1.2) Lus10040427 [exp] 148 / 4e-42 AT2G01930 295 / 4e-100 basic pentacysteine1 (.1.2) Lus10023543 [exp] 148 / 4e-42 AT2G01930 292 / 5e-99 basic pentacysteine1 (.1.2) Lus10009316 [exp] 42 / 0.0007 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235900 [exp] 468 / 7e-167 AT5G42520 428 / 6e-151 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Potri.002G026700 [exp] 463 / 5e-165 AT5G42520 439 / 2e-155 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Potri.004G163700 [exp] 293 / 1e-98 AT2G21240 378 / 3e-132 basic pentacysteine 4 (.1.2) Potri.009G125300 [exp] 292 / 5e-98 AT2G21240 377 / 5e-132 basic pentacysteine 4 (.1.2) Potri.010G101400 [exp] 152 / 5e-44 AT1G14685 300 / 1e-102 basic pentacysteine 2 (.1.2.3) Potri.015G032900 [exp] 148 / 2e-42 AT1G14685 259 / 3e-86 basic pentacysteine 2 (.1.2.3) Potri.015G032800 [exp] 147 / 3e-42 AT1G14685 268 / 9e-90 basic pentacysteine 2 (.1.2.3) Potri.012G040600 [exp] 147 / 5e-42 AT2G01930 259 / 3e-86 basic pentacysteine1 (.1.2) Potri.008G140200 [exp] 145 / 3e-41 AT2G01930 296 / 1e-100 basic pentacysteine1 (.1.2) Potri.001G133900 [exp] 143 / 3e-41 AT2G35550 199 / 3e-64 basic pentacysteine 7 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06217 [flax] [poplar] GAGA_bind GAGA binding protein-like family
Representative CDS sequence Show only first row Show all	>Lus10024313 pacid=23174973 polypeptide=Lus10024313 locus=Lus10024313.g ID=Lus10024313.BGIv1.0 annot-version=v1.0 ATGGATGATGGAGGGCATCGTGAAAATGGACGACACAAGCCAGATCAGTTTAAAGCAGCTCAGAGTCAGTGGATGCAACCGCCTTCCATGAAGCAAATCA TGTCAATTATGGCTGAACGAGATGCAGCTATTCACGAGAGAAATATGGCTATTTCAGAGAAGAAGGCAGCAATTTCAGAGAGAGATATGGCATTCTTGCA GCGAGACTCGGCTATTGCTGAGAGGAATAATGCCCTAATGGAACGGGACAATGCCATTGCAACACTTCAATATCGAGAGAACTCGTTGCCTAACGGTAAT ATGTCTTCCTGCCCAACGGGATGCCAAATTTCACGTGGAATGAAGCACATTCACCATCCGCAACAACACACACATCACCTCCCCCACATGGATGAAGCTA CTTACAGTAATAGAGAAATGCAAGGAAATGATTCCCTCCCGACTTCACCAGAGCCAACTAAGTCTCGTCGTGGTAAAAGAGCCAAGGAACCTAAGGCAAC ACCACCTAACAAGAAGAGCTCAAAATCACCAAGAAAGGCGAAGAAGGAGAGTGACAACTTGAACAAAGTGATGTTTACAAAAGCAATTGAGTGGAAGACA GAGCAGGATATGGATGATGGCGGAGCTGAAGATTTGAACAAACAGCTAATAACATCAAAGACGGACTGGAAAGGGCAAGACATTGGGTTGAACCAGATTG CATTTGATGAGACAACAATGCCGGCTCCAGTCTGCTCTTGCACTGGTATCTTTAGGCAGTGCTACAAATGGGGAAACGGTGGCTGGCAATCATCATGCTG CACAACTACTCTGTCGATGTACCCTCTACCTACGGTGCCAAACAAGCGACATGCTCGTATAGGTGGAAGGAAGATGAGTGGTAGTGCTTTCAGCAAACTT CTCAGCCGTCTGGCAGCTGATGGTAATGATCTTTCCCATCCAGTTGATCTCAAGCATCATTGGGCAAAACATGGCACTAATCGTTACATCACAATTAAGT AG
AA sequence Show only first row Show all	>Lus10024313 pacid=23174973 polypeptide=Lus10024313 locus=Lus10024313.g ID=Lus10024313.BGIv1.0 annot-version=v1.0 MDDGGHRENGRHKPDQFKAAQSQWMQPPSMKQIMSIMAERDAAIHERNMAISEKKAAISERDMAFLQRDSAIAERNNALMERDNAIATLQYRENSLPNGN MSSCPTGCQISRGMKHIHHPQQHTHHLPHMDEATYSNREMQGNDSLPTSPEPTKSRRGKRAKEPKATPPNKKSSKSPRKAKKESDNLNKVMFTKAIEWKT EQDMDDGGAEDLNKQLITSKTDWKGQDIGLNQIAFDETTMPAPVCSCTGIFRQCYKWGNGGWQSSCCTTTLSMYPLPTVPNKRHARIGGRKMSGSAFSKL LSRLAADGNDLSHPVDLKHHWAKHGTNRYITIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10024313 [exp]	0	1
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10012389 [exp]	1.0	0.8370
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10005329 [exp]	2.0	0.7706
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10019121 [exp]	2.6	0.7130
AT5G13470			unknown protein		Lus10005318 [exp]	3.5	0.7640
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	5.7	0.6989
AT3G54630			unknown protein		Lus10030584 [exp]	10.1	0.6814
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042402 [exp]	12.7	0.7672
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020314 [exp]	12.8	0.6863
AT1G30320			Remorin family protein (.1)		Lus10038522 [exp]	13.9	0.6960
AT4G10925			Nuclear transport factor 2 (NT...		Lus10001815 [exp]	14.1	0.7042

Compare expression of checked genes

Lus10024313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.