Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38900 309 / 6e-100 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G21230 271 / 2e-85 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G31370 156 / 2e-43 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT2G40620 155 / 7e-43 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 147 / 2e-41 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT1G43700 149 / 3e-41 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT1G06070 149 / 2e-40 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12940 118 / 6e-30 bZIP UNE4 unfertilized embryo sac 4, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G13150 112 / 3e-28 bZIP AtbZIP31 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12900 100 / 1e-23 bZIP AtbZIP33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012390 [exp] 783 / 0 AT4G38900 337 / 8e-111 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10033174 [exp] 466 / 7e-163 AT4G38900 283 / 7e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10010616 [exp] 463 / 8e-162 AT4G38900 276 / 1e-87 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10018061 [exp] 359 / 3e-119 AT4G38900 529 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10042057 [exp] 354 / 2e-117 AT4G38900 522 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10012391 [exp] 291 / 9e-98 AT4G38900 196 / 3e-60 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10000069 [exp] 246 / 6e-80 AT4G38900 202 / 3e-62 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10018899 [exp] 164 / 1e-46 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10029773 [exp] 164 / 2e-46 AT1G43700 311 / 6e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125400 [exp] 380 / 7e-127 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.004G163800 [exp] 378 / 6e-126 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.019G130000 [exp] 164 / 4e-46 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G069500 [exp] 160 / 2e-45 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.005G190700 [exp] 160 / 3e-45 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.013G091400 [exp] 158 / 2e-44 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G156900 [exp] 159 / 4e-44 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.017G027400 [exp] 155 / 2e-42 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G130800 [exp] 153 / 6e-42 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 89 / 1e-19 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10024314 pacid=23174877 polypeptide=Lus10024314 locus=Lus10024314.g ID=Lus10024314.BGIv1.0 annot-version=v1.0 ATGTGTGATTCAATGCGGCAATCCTCACCCAGTGATAGTCTGGAAGAGGCTAGCATCAACAAGAGGATTGGTTTGCCTCCTTCGCATCCAAATAACCACC ATATATTGTCTTCTGGATTGGTCTCAGACCAGCAGCAGATGGGTTTGAATCGTGGCAGGCCATCTCATTCGAGGTCTTTGTCTCAATCCTCAATGTTCTC TCTTGATTGTCTTCCTCCATTGAGTCCTCTGCAGCATCTGTCCATGGTCGGGGATGTGTCTATGGAAGAAAAGGCTGGTGCTTCCCGTGGATTGTTGGTT CCTGGTTCAAGGGTCAATGAGGGATTGCCTCCTCGTAGAGGCCATAGGAGGTCCATGAGTGATAATGTCCCATTGGGATTTGGAGCCATGATTCAATCTT CGCCTCAACTGATTCCTATTGGGGGCCAGGGTGGTTTTGATCGGTTCAAATTGGTGAAACAGGAGGTGGAAGGGATGGGTGATAGGCGATCGATGGTAGA GGTTGGTGATGATATGTTGAATGCTTATATGGATAATATTGATCCATTGAACTCATCTGGTACCGAGGATAAAGATTGGGATAGCAGGGTTAGTGGTACT AAGACAAATGGAACTGAAAACAGTGATAATGAGGCAGAGAGTCATATAAAAGGGCTTAAGAGAAATGCTGATGGTGACATTGGACCTGCTGGCCGGCACT ATAGGACTGTGCCGATGGATAGCTTTATGGGAAGCCTGCGATTAGATGATGAATCGATGAAGATTCCTCCTGCTGGAAATAGAATTGGTCAACTCTCATC TAGTAGCTCAATGCAAGGGAGTCTCACAAAGTTCAACTTGGAGTTTGGAAACGGTGAATTTACTGAAGCGGAGCTGAAGAAGATTATGTCCAATGACAAG CTTACTGAGCTTGCAATGGCTGATCCAAAGCGTGTCAAAAGGATCTTGGCAAATCGTCTATCTGCTGCTCGGTCCAAGGAGAGAAAAATGAGGTACATTT CTGAATTAGAGCAAAAGGTGCAAACTTTACAGGCGGAAGCCACTACATTGTCTGCCCAGGTTACGGTGTTACAGCGCGATTCTTCAAATCTGACAAGTCA GAACCATGAACTGAAGTTTCGCCTTCAAGCAATGGAACAACAGGCTCAACTCAAAGACGCTTTGAATGAAGCATTAGTTGGTGAAGTCCAACGACTGAGG CTTGCTGCGACAGATGTTGGAGCAGATACTAGTCATCAGCAGCAGCTTCTTAGTAATATAATGCAGGATCAGAATGCATATCAGCACCAGAGACAACGAT CAACACAACTAAACCAAGCGCAGAGCAGCAAATGA
AA sequence Show only first row Show all	>Lus10024314 pacid=23174877 polypeptide=Lus10024314 locus=Lus10024314.g ID=Lus10024314.BGIv1.0 annot-version=v1.0 MCDSMRQSSPSDSLEEASINKRIGLPPSHPNNHHILSSGLVSDQQQMGLNRGRPSHSRSLSQSSMFSLDCLPPLSPLQHLSMVGDVSMEEKAGASRGLLV PGSRVNEGLPPRRGHRRSMSDNVPLGFGAMIQSSPQLIPIGGQGGFDRFKLVKQEVEGMGDRRSMVEVGDDMLNAYMDNIDPLNSSGTEDKDWDSRVSGT KTNGTENSDNEAESHIKGLKRNADGDIGPAGRHYRTVPMDSFMGSLRLDDESMKIPPAGNRIGQLSSSSSMQGSLTKFNLEFGNGEFTEAELKKIMSNDK LTELAMADPKRVKRILANRLSAARSKERKMRYISELEQKVQTLQAEATTLSAQVTVLQRDSSNLTSQNHELKFRLQAMEQQAQLKDALNEALVGEVQRLR LAATDVGADTSHQQQLLSNIMQDQNAYQHQRQRSTQLNQAQSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10024314 [exp]	0	1
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10007493 [exp]	4.7	0.8990
AT1G18210			Calcium-binding EF-hand family...		Lus10031345 [exp]	5.5	0.8925
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	7.7	0.8906
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012391 [exp]	9.8	0.8563
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10021531 [exp]	13.4	0.8691
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	14.3	0.8815
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	15.7	0.8842
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10008015 [exp]	16.5	0.8761
AT3G20600		NDR1	non race-specific disease resi...		Lus10011162 [exp]	16.8	0.8788
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10025892 [exp]	17.0	0.8440

Compare expression of checked genes

Lus10024314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.