Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19860 254 / 9e-81 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G51180 104 / 3e-24 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G66270 97 / 7e-22 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012404 [exp] 718 / 0 AT1G19860 256 / 1e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10040921 [exp] 56 / 4e-08 AT4G02560 677 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2) Lus10009816 [exp] 54 / 1e-07 AT4G02560 559 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G025100 [exp] 385 / 6e-132 AT1G19860 319 / 8e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G236300 [exp] 370 / 8e-126 AT1G19860 318 / 2e-105 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G116001 [exp] 136 / 2e-37 AT1G19860 122 / 3e-32 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G013600 [exp] 129 / 7e-33 AT1G19860 109 / 1e-25 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G115901 [exp] 71 / 2e-14 AT5G66270 75 / 5e-16 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.014G132800 [exp] 53 / 3e-07 AT4G02560 349 / 8e-104 luminidependens, Homeodomain-like superfamily protein (.1.2) Potri.002G209216 [exp] 52 / 6e-07 AT4G02560 364 / 4e-109 luminidependens, Homeodomain-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024316 pacid=23174959 polypeptide=Lus10024316 locus=Lus10024316.g ID=Lus10024316.BGIv1.0 annot-version=v1.0 ATGTCTGTTTTCTTTCATCAGGTGCGGTTGTTCCTGTCAGATGAATCTCCTTCACAAGTTGGAGCGAGTCCTCAAGATCACCTCCAAGCAAAGGCATCAT GGGTATCTCATCTAACCGGAACAGCCAATGAAGATGTTCTACCTCCTGGGTTTGAATTAGGCCAGCCTCCCAACCAGCCACAGATCAATGCATCTGATGT TCCCCTTGTCAAATGGAGGTGTCCACCTAGGTTTTTGATAAACCTAGAATGGCTAGTGGTTGCCGGAGAAGAGAGCCAGGATGTTGAGCCTCAAAACCAA CGAGAGATGAGAGTACTTGAAGCCGTTTACCCTCGCCCTTCTGCAATTCCGACCAACCCCACTTTTTCTGTGGAAATGAAGGATTCCCAGCATAATGATC ATCAAGTACCTGTTATTCCCATCACCCCAATTGAAGATGAAGACTCATCTGATGTCATCAATAGTTTTGTTGGATCAATGAGTGCACAACCACAGTCATC AGTTCCTGGGCTTCCTCGATTCGGCAGTTTTCCTGAAAAAATGGCTGGTGGCCTTGGCCATGACGTCGAATCTGATGTAGTAGCTGTAGCATCTGCAGCC CTTTCTGCTATGAATGGGATCAGCACTGAACAAGGAAGCTTAATAGACCATGACCTGCTCATCAAAATCCTCAGCAACCCACAATTGATGGAGAAATTGG TTAAAGATTCTGCTAAGCAAGCTGCACCATTTGTTGCGTCCGCTCCTAAAATAACATCATCAGACCCTTCTCATATTTACAATGATAGAACAGAATCCAA TGCAACAGCGTCTTTAAGTGCCAGTGAAGGTGTGCCGTTTTACTCTACTGGTGCAAGTGTGCAAGCTCCTCCAGCGGCATCTTATATGAATATTCCTCCA CCTGCAGTTTCTTCTTCATCTAGTGGAGTGATTAAAGATGTTAGTTACTTTAAGAACCTGATTCAGCAGCATGGAGGTGAAAGAACCGATCGATATGGAC AACAACCGCGACAGGATCAGTTAGGGTTTTCGAAACAGAGGACAAAAATTATGAAGCCGTGTGCATATTTCAACAGCTCGAGAGGATGTAGAAACGGAGC CAACTGTGCATTTCAGCATGACAGCAGCAGCTCTCAAGAGAGAATGGGATCTGAGATGCAAAACTCCAAAAGAATGAAAATGGATAGAGAGATTAGTAGT TAG
AA sequence Show only first row Show all	>Lus10024316 pacid=23174959 polypeptide=Lus10024316 locus=Lus10024316.g ID=Lus10024316.BGIv1.0 annot-version=v1.0 MSVFFHQVRLFLSDESPSQVGASPQDHLQAKASWVSHLTGTANEDVLPPGFELGQPPNQPQINASDVPLVKWRCPPRFLINLEWLVVAGEESQDVEPQNQ REMRVLEAVYPRPSAIPTNPTFSVEMKDSQHNDHQVPVIPITPIEDEDSSDVINSFVGSMSAQPQSSVPGLPRFGSFPEKMAGGLGHDVESDVVAVASAA LSAMNGISTEQGSLIDHDLLIKILSNPQLMEKLVKDSAKQAAPFVASAPKITSSDPSHIYNDRTESNATASLSASEGVPFYSTGASVQAPPAASYMNIPP PAVSSSSSGVIKDVSYFKNLIQQHGGERTDRYGQQPRQDQLGFSKQRTKIMKPCAYFNSSRGCRNGANCAFQHDSSSSQERMGSEMQNSKRMKMDREISS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10024316 [exp]	0	1
AT5G07960			unknown protein		Lus10021623 [exp]	3.2	0.8682
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10017654 [exp]	6.2	0.8289
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027570 [exp]	8.8	0.8602
AT1G59650		CW14	Protein of unknown function (D...		Lus10010740 [exp]	11.0	0.8145
AT3G25120			Mitochondrial import inner mem...		Lus10013127 [exp]	11.2	0.8517
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10033611 [exp]	12.0	0.7900
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	13.1	0.8571
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Lus10009246 [exp]	16.2	0.8616
AT1G05205			unknown protein		Lus10039669 [exp]	16.7	0.8476
AT1G24050			RNA-processing, Lsm domain (.1...		Lus10010705 [exp]	18.7	0.8520

Compare expression of checked genes

Lus10024316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.