Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39590 615 / 0 TLD-domain containing nucleolar protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012406 [exp] 988 / 0 AT5G39590 657 / 0.0 TLD-domain containing nucleolar protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G236400 [exp] 660 / 0 AT5G39590 639 / 0.0 TLD-domain containing nucleolar protein (.1) Potri.002G025032 [exp] 424 / 8e-147 AT5G39590 414 / 4e-143 TLD-domain containing nucleolar protein (.1) Potri.002G024966 [exp] 228 / 1e-71 AT5G39590 192 / 2e-58 TLD-domain containing nucleolar protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07534 [flax] [poplar] TLD TLD
Representative CDS sequence Show only first row Show all	>Lus10024317 pacid=23174931 polypeptide=Lus10024317 locus=Lus10024317.g ID=Lus10024317.BGIv1.0 annot-version=v1.0 ATGGGAGCGTCTTCATCGACTCCGCAGCCGGGTTCCAGCGAGCAAAGGGAAGCGGAAAGCTTAGCGGCTTCAATCGGAGCACTTCCTACTCTCCAAACTT CATTTTCGAAGCTTGCTGATCCTCAGACAAGTGCAATTCCTCTTGAATCGCTTCAGAAATGCTTCAGTCTTAGTTATGGAAACCCAGTCAGTGAAGCAAC AGAAAGGTCCGATTCGTTTCTTGGATTATTGGATCATCTGGGGAAAACACTGGTGGATATGTTTTTCGTGACAGAGAAGGGTGGATTCATCAATTGGATT GAGTATGTGAAAGGTTACGTGAAATGCTGTGGAAGGATGACTAGTTCAATGTCCCTTAACGTTTTGTTGAGGCTATTTGCTGGGACATTGGCAAACTCCG GGAATCCTTCGAAATTGGAGTTTGAATCCATAGGTGTAGATGGTAGTTACAAGGTAAGTGGTTATCTTTTACCTGCTGATGTACATCTCCTGCTATTCAT CTCATGGACTATGCTGTGGGATTCAAAAAGTTTGCGGTGTTCACAAGACAAAGGAAGTTTGGTCCTTCCGGATGTTAGTCATATGGTGCTGTCTGCTGTT GTTTCGTGTGTTGACGATGGTCTTGATGGAGTAGACTTATGGGACTGTGACTTTGCTAGTTTGGATGTTCAACTTCCTGCTGGGAAGTTCCTTGCTTGGG CACTGGCTACCATTCCTAGCCTGACAGACTGCCTGGCGCAATTCATCAGCGAGAGGCTCCGAAAATGCGGTACTTCAGAGGATGACTCTGCGCCGTGTAC CTCTGCTTCTGGAGGGTCTGTTTCAAGTGCAACAAATATGTATCTTTTAACTTGCGGGCGTGCATGGGCGATTTCTCTTTCTATGAAGAATACAATAAGC TTAGAAATCTTAAAACCATACCTCTGCAATGATGGTGATCGATTGGACAAACATCTCTATCGGTCATGTGTTCACAGGAAGGGCATGAATCGATTCTGGT CTAACGTTGAAGGTTATCATGGTCCGTTGCTTATCTTGGTTTCTGCTACTTCCAGAGAAGAGAGCTCAGTTACGACGAAATGGGTTATAGGTGCTCTTAC GCAACATGGATTAGAGAACAAAGATCAATTCTATGGAACCTCTGCAACCTTATATGCTATCTGTCCAGTTTTCCATGCATTTCCATCTTCTGGAAAGGAG AAGAACTTTGTGTACAGCCACTTGCATCCTACTGGTAGAGCATATGATCCACACCCAAAGCCTGTTGGACTCGGATTTGGTGGGGCGATGGGGAACGAGA GGATATTTCTCGATGAAGACTTTGGTAGAGTAACTGTTCGTCATCATGCAGTTGACAAAACTTACCGACATGGTTGTCTATTCCCCAATCAGGGGTTTCT CCCCGTGGAAGCTTCGGTTTCAGAAGTTGAGGTGTGGGGACTTGGTGGGGAGTCGGCGAGGTCAGCACAAACATCATACAAAAAACGTGAGCAACTTTTC ACTGAGCAAAGACGAAAGGTCGATCTGAAAACATTTGCCAACTGGGAAGATTCGCCGGAGAAGATGATGATGGATATGATGGGTAACCCCAACACAGTTA GAAGAGAAGACCGTTAA
AA sequence Show only first row Show all	>Lus10024317 pacid=23174931 polypeptide=Lus10024317 locus=Lus10024317.g ID=Lus10024317.BGIv1.0 annot-version=v1.0 MGASSSTPQPGSSEQREAESLAASIGALPTLQTSFSKLADPQTSAIPLESLQKCFSLSYGNPVSEATERSDSFLGLLDHLGKTLVDMFFVTEKGGFINWI EYVKGYVKCCGRMTSSMSLNVLLRLFAGTLANSGNPSKLEFESIGVDGSYKVSGYLLPADVHLLLFISWTMLWDSKSLRCSQDKGSLVLPDVSHMVLSAV VSCVDDGLDGVDLWDCDFASLDVQLPAGKFLAWALATIPSLTDCLAQFISERLRKCGTSEDDSAPCTSASGGSVSSATNMYLLTCGRAWAISLSMKNTIS LEILKPYLCNDGDRLDKHLYRSCVHRKGMNRFWSNVEGYHGPLLILVSATSREESSVTTKWVIGALTQHGLENKDQFYGTSATLYAICPVFHAFPSSGKE KNFVYSHLHPTGRAYDPHPKPVGLGFGGAMGNERIFLDEDFGRVTVRHHAVDKTYRHGCLFPNQGFLPVEASVSEVEVWGLGGESARSAQTSYKKREQLF TEQRRKVDLKTFANWEDSPEKMMMDMMGNPNTVRREDR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39590			TLD-domain containing nucleola...		Lus10024317 [exp]	0	1
AT5G39590			TLD-domain containing nucleola...		Lus10012406 [exp]	1.0	0.8575
AT1G27180			disease resistance protein (TI...		Lus10000423 [exp]	8.4	0.7799
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10037484 [exp]	14.2	0.8212
AT3G29240			Protein of unknown function (D...		Lus10030696 [exp]	18.9	0.7706
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10003275 [exp]	22.4	0.7891
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033500 [exp]	22.7	0.7658
					Lus10018536 [exp]	24.4	0.7721
AT5G10190			Major facilitator superfamily ...		Lus10027265 [exp]	25.6	0.7356
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10026957 [exp]	29.9	0.7258
AT1G77700			Pathogenesis-related thaumatin...		Lus10028079 [exp]	32.5	0.6769

Compare expression of checked genes

Lus10024317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.