Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27230 565 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G40830 528 / 0 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G05390 237 / 1e-73 unknown protein AT4G01240 224 / 7e-67 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29790 203 / 2e-61 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 50 / 3e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G19430 49 / 6e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G51070 48 / 1e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G23300 46 / 5e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 46 / 5e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034506 [exp] 622 / 0 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033164 [exp] 484 / 2e-168 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012420 [exp] 461 / 2e-164 AT3G27230 320 / 7e-109 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024319 [exp] 396 / 3e-139 AT3G27230 268 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020803 [exp] 252 / 6e-80 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 250 / 3e-79 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010138 [exp] 231 / 2e-71 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004494 [exp] 229 / 2e-70 AT3G05390 699 / 0.0 unknown protein Lus10029907 [exp] 228 / 3e-70 AT3G05390 697 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G236600 [exp] 637 / 0 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 630 / 0 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G231100 [exp] 251 / 4e-79 AT3G05390 287 / 2e-92 unknown protein Potri.017G135100 [exp] 249 / 4e-79 AT3G05390 278 / 3e-89 unknown protein Potri.004G083800 [exp] 246 / 2e-77 AT3G05390 278 / 3e-89 unknown protein Potri.013G019400 [exp] 243 / 1e-75 AT3G05390 753 / 0.0 unknown protein Potri.004G116900 [exp] 229 / 2e-70 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G165300 [exp] 226 / 4e-69 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G352700 [exp] 218 / 4e-67 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.011G079000 [exp] 212 / 8e-65 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10024318 pacid=23174915 polypeptide=Lus10024318 locus=Lus10024318.g ID=Lus10024318.BGIv1.0 annot-version=v1.0 ATGGGATCAGTCTCACTGAAAACTGGAGACGGAACAGCCAGATTCAAGCGAGCATCACTATGCTCTTCCGCGGTCAACCTCCTCATGATCTTCTCAGTCA TCACTACTAATCTCTTCGCTCTCTACGCCTTCACTTACTCCCCCAATCTCAACAACAACAACATTCACCATAAGAACATCTCCTTAATCTCCCACCAAGT CTCTCTGATTCTCAGAGAGATCGATTCTTCCCAGAAGAAGCTAGCCAGGATGGAGAAGGAGCTATTGGGTTACGACACAATTGATATCTCCCGACCCAAC ATCGCCACCGAGCTCAAATTGTATCTCCAGCATCACAATCTCCCACTAGGCAAAGATTCCAGAACTGGGATCACTGAGATGGTGGCATCCGTTGGAAATT TTTGTGACAAATCTGCTGATTTGCTCTCTCAGTATATGAACTATAAGGTTTCTGGAGCTTGCCCTGATGACTGGAGCCTAGCCCAGAAGCTGATTCTTCG AGGGTGTGAGCCTTTGCCCAGGAGGAGATGCTTTGCCAACTCAATTCCTAAGGTGGGTCTTCTTCACTCATTTCCTCTTTCTCTTTGGAAGCCTGTGAGC GATAAGATTGCTAGTTGGAGTGGTCTTGGTTGCAAGAGCTTTGAGTGTTTGAGTAAGAAGAAACTACTAAGTGAAGAATTTGATTTAGGTAATGAGAATC ATAAATATGTTAAGGGTAGAGGGAAGAATGATTTCTTGGCTGATGATGTTTTGGGATTGGCAAGTGGTGGGATTAGGATAGGGCTTGACATTGGTACTGC TTCTGGTGGGACATTTGCTGCTAGAATGGCTCAAAGGAATGTCACTGTGATTACAAATACACTGAATTTGGACGCTCCTTTTAGTGAGTTTGTTGCTGCC AGAGGCCTATTTCCTCTTTACTTGAGCTTGGACCATAGGTTTCCCTTCTACGACAATGTCTTCGATTTAATTCATGCTGCTGCATTTGATTTCGGGACCA AGCCTGAGAAGCTAGAGTTCTTGATGTTTGACATTGATCGGATACTGAGAGCTGGGGGCTTGTTTTGGCTGGATAACTTGTACTGTGCCAATGATGACAA GAAATCGGCTTTGACTCGTTTGATTGAGAAATTTGAGTACAAGAAATTGAAATGGGTTGTGGGGGATAAGCTTGATTCAACTGGGAAACCCCAAGTTTAT TTATCTGCAGTGCTTCAAAAACCAGCAAGAGGATGA
AA sequence Show only first row Show all	>Lus10024318 pacid=23174915 polypeptide=Lus10024318 locus=Lus10024318.g ID=Lus10024318.BGIv1.0 annot-version=v1.0 MGSVSLKTGDGTARFKRASLCSSAVNLLMIFSVITTNLFALYAFTYSPNLNNNNIHHKNISLISHQVSLILREIDSSQKKLARMEKELLGYDTIDISRPN IATELKLYLQHHNLPLGKDSRTGITEMVASVGNFCDKSADLLSQYMNYKVSGACPDDWSLAQKLILRGCEPLPRRRCFANSIPKVGLLHSFPLSLWKPVS DKIASWSGLGCKSFECLSKKKLLSEEFDLGNENHKYVKGRGKNDFLADDVLGLASGGIRIGLDIGTASGGTFAARMAQRNVTVITNTLNLDAPFSEFVAA RGLFPLYLSLDHRFPFYDNVFDLIHAAAFDFGTKPEKLEFLMFDIDRILRAGGLFWLDNLYCANDDKKSALTRLIEKFEYKKLKWVVGDKLDSTGKPQVY LSAVLQKPARG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024318 [exp]	0	1
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10012420 [exp]	1.0	0.9047
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024319 [exp]	2.4	0.8342
AT4G14147		ARPC4	protein binding (.1.2)		Lus10027499 [exp]	4.6	0.7566
AT5G11600			unknown protein		Lus10002800 [exp]	10.2	0.7069
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031814 [exp]	10.8	0.7453
AT4G30993			Calcineurin-like metallo-phosp...		Lus10040035 [exp]	11.0	0.7413
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015320 [exp]	11.6	0.7284
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10019546 [exp]	13.9	0.6819
AT3G07470			Protein of unknown function, D...		Lus10025861 [exp]	19.4	0.6938
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10033164 [exp]	23.2	0.7355

Compare expression of checked genes

Lus10024318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.